Pairwise Alignments

Query, 557 a.a., RNA helicase from Pseudomonas simiae WCS417

Subject, 631 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  454 bits (1167), Expect = e-132
 Identities = 264/567 (46%), Positives = 355/567 (62%), Gaps = 28/567 (4%)

Query: 8   FAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAFALPILHC 67
           FA   L   IL A+   GYE+PS IQ + IP +++G+D++G AQTG+GKTAAF+LP+L+ 
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 68  IDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQ 127
           IDP  R PQ L+LAPTRELA+QVA A   ++K M GV VVA+YGG     QL+A+R G Q
Sbjct: 68  IDPDLRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127

Query: 128 IVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQTVLFS 187
           IVV TPGRL DHL+R    LS ++ LVLDEADEML++GF++D+E I   +P   QT LFS
Sbjct: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTALFS 187

Query: 188 ATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDA 247
           AT+P++IR I +R ++DP+ V+IQ+   T   I Q++  V+  +K  A++  LE EDFDA
Sbjct: 188 ATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDA 247

Query: 248 LIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAAR 307
            I+FVRTK ATL++A ALE  GY +AALNGD+ Q  RE+ ++ LKDGRLDI++ATDVAAR
Sbjct: 248 AIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307

Query: 308 GLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQK 367
           GLDV RI+ V N D+P D ESYVHRIGRTGRAGR GRALL V  RERR+L+ IER     
Sbjct: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367

Query: 368 VAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADI-------GCTPRAL 420
           + E  LP+A  +   R++K     + +    ES+  D    L + I             L
Sbjct: 368 IPEADLPNADLLGKRRLEKFA---AKVQQQLESSDLDQYRALLSQIQPVAEGEELDMETL 424

Query: 421 AAALLRKATNGQALTLAAIEKERPLVPNS--APRGDRPERSGDRPDRGDRERRAPVPLAE 478
           AAALL+ A   ++L    +  + P+ P      R DR ER GDR DR DR  R   P   
Sbjct: 425 AAALLKMAQGERSL---IVPPDAPMRPKREFRDRDDRFERRGDRNDRNDRGPRGDRPERG 481

Query: 479 GRAR-------------CRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLV 525
           G  R              R  +G  DG+  ++++GAI NEG ++   IG I++  S S +
Sbjct: 482 GEDRPRRERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTI 541

Query: 526 ELPEDGLEKLLAKLKDTRVAGKQLKLR 552
           ELP+    ++L     TR+  K + ++
Sbjct: 542 ELPKGMPGEVLQHFTRTRILNKPMNMQ 568