Pairwise Alignments

Query, 1572 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 1530 a.a., putative RHS family protein from Pseudomonas putida KT2440

 Score =  327 bits (837), Expect = 8e-93
 Identities = 310/1159 (26%), Positives = 480/1159 (41%), Gaps = 180/1159 (15%)

Query: 421  KTATNGCPVSMVTGEELLTLT---DGTLDGLLPFEWSRLYRTSAVETDCGLGFGWSHSLA 477
            K  T G PV++ TG +L       D  L GLL  +W+R Y +  + +D  LG GWS    
Sbjct: 284  KGCTLGNPVAVATGSKLQEGPEDIDFNLPGLLAIQWARRYDSRDMRSDGLLGMGWSVPYE 343

Query: 478  ---HRLSVSGDAVVWTDHENRSTTLPLPTASRPAITNSLAEAAIYLGAVPDELVLSQ-GS 533
                R+       +W   +N    L L   S      S  +   +      + V+     
Sbjct: 344  VELARVPHPQGGTLWIYIDNDGNRLELGRLSAGDAFISAVDGLAFFQLEDGQTVVEDINE 403

Query: 534  RFYHFRD--------GALTAISDAYDNRLRICRDFLGRIERLDNGVGRSLFLRYASSRIV 585
              Y   D          L  + D   N L +  D  GR++ L +  G+++   + ++R  
Sbjct: 404  GLYRVFDTDPLNPKRSRLIRLGDRNLNCLDLLYDEQGRLKALYDKYGQTVVQLHYAARHP 463

Query: 586  AVDYQIERAV--DDGPFVWVTEQTVVAYAYDDSGRLISATNAVGES-EVYRYDDQHVILE 642
                ++ R    + G       + +V+Y Y D+G+L    +A  +    + Y  +  +  
Sbjct: 464  QRVSEVSRVFLKNGGTPTVERSELLVSYRYTDNGQLHEVLDATDQRVRRFTYTPEGYLNS 523

Query: 643  RGLAGGASFFWAWERAGKAA---------------------------RCVRHWASFSQMD 675
              LA GA   + W R                                R +RHW S  + +
Sbjct: 524  HQLASGAVREYEWARFAIPETRPTPKRLDGTPYRLPPLLEPQPDHEWRVIRHWGSDGE-E 582

Query: 676  TRYAWD-DNGQVTVFNAAGSQ---------EVYVHD-----------LRARLGQRVDPDG 714
             R+ ++ + G+  V +  G +         EVY H            +  +L +R+DP G
Sbjct: 583  YRFEYNLEAGETLVTDNLGRRDHYYWGPLYEVYKHIDPQGNCWLAEVIAGQLIKRIDPQG 642

Query: 715  AQHFKSYDDPGRLTVEQAPLGAITAYPYDEAGRLVALFPGDDAPTTYEHDNGFVRVVRRG 774
             +   SYDD GRL   + PLG      Y     L                   ++V    
Sbjct: 643  GEWRYSYDDIGRLIETRDPLGRSEHIKYLRHWALP------------------IQVTDTA 684

Query: 775  QAVWKYERNNQGDVTRKTDPDGNATDYSYNKYGQLVGVWYPDHSCHRLTWNERGQLLEEQ 834
                +Y  ++ G++  + DP G  T Y Y+  G++  V         L+WN  GQLL  +
Sbjct: 685  GRTRQYGYDSHGNLLWQQDPLGRETQYQYDPEGRVTQVTDALEKSKYLSWNTCGQLLSYR 744

Query: 835  LPNGVIKRYCYDDLGRQVAREDAQGALTQYQWDSVGRLIRVVLPGGATREYSYNAYGKIT 894
              +     Y YD  GR     +A+G  T +++D+ G L+    P G    Y  +  G++T
Sbjct: 745  DCSNAQTLYHYDAHGRLRESINARGEHTHFRYDARGYLVESERPDGRIDRYEIDVAGQLT 804

Query: 895  SERNELGHVTRYEYADGLHLISRRINADGTQVKYRYDNVRLLLTEIENEVGETYRLQYHS 954
               +      ++ Y     L+ R  +A G  VK+RYD    LL ++ NE  E+YR  +  
Sbjct: 805  RYIDPAQKTLQFRYDPSGRLVERT-DAMGYSVKFRYDAYGRLL-QLTNENDESYRFGWDE 862

Query: 955  NGLTQQEIGFDGQRSAYAYDLNGNL---------QEKTEHGDDGSQLVTR-----YERDH 1000
                  +   DG    YAY++   +          E+    D+     T      +ERD 
Sbjct: 863  LDRLVAQKDLDGSGRLYAYNVLDEVIRLTHVPSPDEQPPLSDNAPPTRTTAIRHDFERDA 922

Query: 1001 AGRLVRKTLPDGSLVDYAYDRQGNLLSV-----ENGHWALAYEYDSQNRLTAEHQGWGTL 1055
             GRLV K   DG+  DY YD   NLLS+     +     L Y YD+  +L +E    G L
Sbjct: 923  IGRLVSKRTEDGT-TDYRYDAADNLLSITFTDNKGEKQQLDYTYDANGQLLSETNSAGLL 981

Query: 1056 RYGYDACDNLQTLRLPDNNRVTFNHAKGGLLEKVEVNGQTLTAHLFDTGREHQ-RGQGKL 1114
            +Y YD   NLQTL LPD   +   +   G L ++ +NG+ ++    D   +   R QGKL
Sbjct: 982  QYRYDELGNLQTLVLPDQRELNHLYYGSGHLHQINLNGRVISDFERDAVHDEVLRTQGKL 1041

Query: 1115 LSSYQYDAQGRLFNHGLCNVEGA-----IYQRQYHYDTCGNLT----------------- 1152
            ++  +YD  GRL    +   +       +  + Y YD   NL                  
Sbjct: 1042 VTRTRYDTSGRLAGKAIHYRDAPAEVLPLLDKAYRYDASDNLIAEVLTQTQRRGMSNAAN 1101

Query: 1153 -----------RRLD------TRKGEHHYHYDALSRLIRADHSQG-----EQERFAHDPA 1190
                       R LD      T  G + Y YD   +L     S+      + E F +D A
Sbjct: 1102 DENANLEQIIGRFLDLPHTGKTYSGHNRYGYDLNEQLQTVHQSRPNWQATQVEDFKYDKA 1161

Query: 1191 GNLLMQNRPGPDI---VAGNRLMIQGDHHYDYDAFGNLIRERRGKGHTLVTEYRYDCQHR 1247
            GNL      GP +   +  NR+++  D  Y YD FG L  +R G     V  + YD + R
Sbjct: 1162 GNLF----DGPKLNGLIKHNRVLVYQDKRYRYDRFGRLCEKRIGSNW--VQYFEYDAEQR 1215

Query: 1248 LIGIKKPNG---QTASYRYDPFGRRISKTV-------DGITTEFFWQGDTLIAEHHANRH 1297
            L+ +++      +   + YDP GRRISK V             F WQG  L+ E  +   
Sbjct: 1216 LVCVEQYRSGERERVVFAYDPLGRRISKEVYQRDYPEPRRRVLFHWQGFRLLQEVQSGLA 1275

Query: 1298 RSYLYEP-DTFRPLALLEGFGPKETKAYHYQLDHLGTPQELTNPDGEIVWSAHYRAYGEI 1356
              Y+Y   +++ PLA ++G  P     +++    +G P++LT+ DG  +W + +  +G+I
Sbjct: 1276 SLYVYATVESYDPLARVDG-KPGSEAIHYFHTTLVGQPEQLTDSDGNTIWRSDHHGWGKI 1334

Query: 1357 TRV----DIGKVDNPLRFQGQYFDQESGLHYNRHRYYNPDIGRYLTPDPVKLAGGINTYQ 1412
                     G+  N LR QGQY D+E+GLH+N  R+Y+PDIGR+ T DP+ + GG+N Y 
Sbjct: 1335 INEWHSQQNGREQN-LRNQGQYIDRETGLHFNIFRFYDPDIGRFTTTDPLGIEGGVNLYS 1393

Query: 1413 YVPNPTGWIDPLGLSNCPE 1431
            Y PN   + DPLGL  CPE
Sbjct: 1394 YAPNIVNYSDPLGL--CPE 1410