Pairwise Alignments

Query, 1572 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 1385 a.a., Rhs-related protein from Pseudomonas putida KT2440

 Score =  436 bits (1120), Expect = e-125
 Identities = 359/1140 (31%), Positives = 500/1140 (43%), Gaps = 161/1140 (14%)

Query: 426  GCPVSMVTGEELLT-LTDGTLDGLLPFEWSRLYRTSAVETDCGLGFGWSHSLAHRLSVSG 484
            G PV + TG +L+    D +L GL+P EWSR Y  S +  D  LG GW       L   G
Sbjct: 232  GNPVDLTTGRKLIPDEIDFSLPGLMPIEWSRFY-ASDLTVDSVLGRGWVLPWEQSLRRQG 290

Query: 485  DAVVWTDHENRS----TTLPLPTASRPA-------------ITNSLAEAAIYLGAVPD-- 525
              +  TD++ R     T  P      P              I  +L     Y G VPD  
Sbjct: 291  AFIYLTDNQGREVPFVTLQPGQRIYNPHEQVYLVCTEGGHYILQTLDNLFFYFGEVPDTN 350

Query: 526  --------ELVLSQGSRFYHFRDGALTAISDAYDNRLRICRDFLGRIERLDNGVGRSLFL 577
                    E VL     F    DG LT IS     R+ +           DN +GR    
Sbjct: 351  TEVPLQRIENVLGHFLHFTRTPDGTLTDISATGGTRVHL---------HYDNPLGRLT-- 399

Query: 578  RYASSRIVAVDYQIERAVDDGPFVWVTEQTVVAYAYDDSGRLISATNAVGES-EVYRYDD 636
                         I+R V++        +T+  Y YD+ G+L +  N  G++   + Y D
Sbjct: 400  ------------DIKRVVNNEAV-----ETLTQYRYDEHGQLSAVINRNGDTVRSFSYAD 442

Query: 637  QHVILERGLAGGASFFWAWERAGKAARCVRHWASFSQ-------MDTRYAWD-------- 681
              ++     A G    + W+  G   R V HW S  +       +D+R +W         
Sbjct: 443  GLMVTHSN-ALGLGCHYRWQTLGDKPRVVEHWTSDGEHYHFRYDLDSRTSWATDVLGREL 501

Query: 682  ------DNGQVTVFNAAGSQEVYVHDLRARLGQRVDPDGAQHFKSYDDPGRLTVEQAPLG 735
                  D+  V   +  G +     D    +     PDG +    YD+  RL  E  PLG
Sbjct: 502  EVQYNADHRVVASRDYGGERYAIELDEHGNMVGLTLPDGNRLQFKYDEFSRLLEETDPLG 561

Query: 736  AITAYPYDEAGRLVALFPGDDAPTTYEHDNGFVRVVRRGQAVWKYERNNQGDVTRKTDPD 795
              T Y Y     LV      D  T                  W+   +++G++  + D  
Sbjct: 562  RKTQYEYHHLTTLVTQVSYPDGST------------------WRARFDDKGNLLAEFDAL 603

Query: 796  GNATDYSYNKYGQLVGVWYPDHSCHRLTWNERGQLLEEQLPNGVIKRYCYDDLGRQVARE 855
            G  T+Y  +  G    +    +    L WN   Q+   Q  +G    Y YD+    VA  
Sbjct: 604  GQMTEYLNSDDGLPHTIIDATYKSKYLWWNTLAQVERYQDCSGKSTYYRYDERQHLVAVT 663

Query: 856  DAQGALTQYQWDSVGRLIRVVLPGGATREYSYNAYGKITSERNELGHVTRY-EYADGLHL 914
            DA    T       G ++R+  P G T  ++YN YG++ S  +  G  TR    A GL  
Sbjct: 664  DALNQTTTLARKPDGEVLRISHPDGTTESFTYNVYGQVLSHTDGKGQTTRLMRTARGLP- 722

Query: 915  ISRRINADGTQVKYRYDNVRLLLTEIENEVGETYRLQYHSNGLTQQEIGFDGQRSAYAYD 974
             S R +A G +V+Y YD   + LT + NE   TY   Y ++    +E+  D     ++YD
Sbjct: 723  -SSRQDAKGQRVRYEYDKA-MRLTALVNENNATYSFAYDASDRLSEEVRVDNLTRRFSYD 780

Query: 975  LNGNLQEKTEHG----DDGSQLVTRYERDHAGRLVRKTLPDGSLVDYAYDRQGNLLSVEN 1030
            + G+L    E G     +  +  T +ERD  GRL+ K   D     + YD    LLS+E 
Sbjct: 781  VGGHLTRLDEIGYGENAERPERHTLFERDAIGRLIAKLNSDAQQ-RFTYDDGDRLLSIER 839

Query: 1031 GHWA-----------LAYEYDSQNRLTAEHQGWGTLRYGYDACDNLQTLRLPDNNRVTFN 1079
                           L Y YD   RLT E    GTL Y YD   NL TL LPD  +V   
Sbjct: 840  QPTGIGKQLGITEEKLEYAYDLLGRLTKEISPDGTLGYEYDPLSNLTTLTLPDGRKVNHL 899

Query: 1080 HAKGGLLEKVEVNGQTLT-AHLFDTGREHQRGQGKLLSSYQYDAQGR------------- 1125
            +   G L ++ ++GQ ++     D  RE  R QGKL S + YDA GR             
Sbjct: 900  YYGSGHLHQLNLDGQVISDMERDDLHREVYRTQGKLTSCFGYDAMGRKAWQFASTLPADK 959

Query: 1126 ---LFNHGLCN---VEGAI--YQRQYHYDTCGNLTRRLDTRKGEHHYHYDALSRLIRADH 1177
               + N G+     VE A     R+Y YD  G L R LD  +GE  Y Y+A  +L   D 
Sbjct: 960  LSQVHNTGINTSLLVEHAYNPIHRRYQYDPAGELVRTLDKLRGEIKYEYEANGQLRSRDT 1019

Query: 1178 -SQGEQERFAHDPAGNLLMQNRPGPDIVAGNRLMIQGDHHYDYDAFGNLIRERRGKGHTL 1236
             S    E F +DPA N L  N    D V  NR+    D  Y YD +GNLI +R   GH+ 
Sbjct: 1020 GSLIGSEEFRYDPAANRLDFNARQFDKVKDNRIKQWRDQEYRYDPWGNLIEKR--SGHSK 1077

Query: 1237 VTEYRYDCQHRLIGIKK-PNGQTAS---YRYDPFGRRISKT--VDGITTE--FFWQGDTL 1288
            +  + YDC++RL+  +   NG+  S   YRYD  GRRI+K   ++G   +  F WQG  +
Sbjct: 1078 LQHFSYDCENRLVRAETLVNGKLESQGEYRYDSLGRRIAKQAEINGEVEQKRFLWQGLRM 1137

Query: 1289 IAEHHANRHRSYLYEPDTFRPLALLEGFGPKETKAYHYQLDHLGTPQELTNPDGEIVWSA 1348
            + E    +   YLYEP ++ PLA ++    +  K Y++  D +GTP ELT+ +GEIVW A
Sbjct: 1138 LREETPGQSILYLYEPGSYAPLARVDQVEGEGQKVYYFHTDQIGTPLELTDSEGEIVWQA 1197

Query: 1349 HYRAYGEITRVDIGKVDNPLRFQGQYFDQESGLHYNRHRYYNPDIGRYLTPDPVKLAGGI 1408
             YR++G I  + I +VD  LRFQGQYFD E+GLHYN  RYY  ++GRY+T DP+ L GG+
Sbjct: 1198 TYRSWGTIETLSIKEVDQNLRFQGQYFDAETGLHYNTFRYYYSEVGRYVTQDPIGLDGGL 1257

Query: 1409 NTYQYVPNPTGWIDPLGLSNCPEGGR-------CKSQARTEEPIDKIRVTRAEPNSPAVS 1461
            N Y+Y  NP GWIDP G   C    R        K+  R   P + +R+  AE  +P ++
Sbjct: 1258 NLYRYGQNPAGWIDPWGW-ECWSTARKNYWKAEAKAPTRAYSPTNLVRM--AEGKAPKMT 1314