Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 192 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 80.9 bits (198), Expect = 1e-20
 Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 5/182 (2%)

Query: 6   DSPSDEALLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSA 65
           DS  D  LL R    D AA   +  R    L      +   A+ A+++ QE++L + R A
Sbjct: 3   DSDPDVELLVRIGNNDPAAVNEMVTRKLPRLLALASRILGDADEAKDVAQESFLRIWRQA 62

Query: 66  TQ-PQGRASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSAGPEQQLSLS 124
                G A F TWL ++A N   D  R+     PL +   E++   AD +A  ++QL  +
Sbjct: 63  ASWRSGEARFDTWLHRVALNLCHDRLRRRK-QRPLSE---EEVLELADSAAPLDEQLESA 118

Query: 125 RDQARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLRRLL 184
              AR+ AAL  LPE QRE  +L+ + +L     AAL    +E ++S L  A+++LR  L
Sbjct: 119 DRSARMAAALAALPERQREAIVLQYYQELSNIDAAALMNISVEALESLLSRARRQLRSQL 178

Query: 185 AE 186
           A+
Sbjct: 179 AD 180