Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 180 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 65.9 bits (159), Expect = 4e-16
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 15/176 (8%)

Query: 13  LLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSATQPQGRA 72
           L+   +TGD AA   L A  +    R+       +++ + + QE+ + ++R     +  A
Sbjct: 10  LICAAQTGDPAAIAGLLAVCQADARRYARRHCQASDIDDAV-QESLMVIVRKVRGLKAAA 68

Query: 73  SFRTWLFQIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSAGPEQQLSLSRDQARLDA 132
           +F +WLF + +   +   R    H+PL            DD     Q  S + D  RLD 
Sbjct: 69  AFSSWLFTVIKRECLRLQRAMFRHDPL------------DDEVAERQLASRTDDALRLDL 116

Query: 133 --ALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLRRLLAE 186
             AL+ LP    EV LLR   +L + +IA   G P   VKSRL  A+  +R  L E
Sbjct: 117 THALESLPAHYLEVVLLRDFEELTIAEIAQRLGEPAGAVKSRLHRARMLVREYLLE 172