Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 225 a.a., RNA polymerase sigma factor RpoE from Variovorax sp. SCN45

 Score = 72.4 bits (176), Expect = 6e-18
 Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 10/187 (5%)

Query: 4   PDDSPSDEALLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIR 63
           P     D  L+ R   GD  AFE L  ++++ + R +  +    +L E+I QET++   R
Sbjct: 23  PRPGEVDFQLVQRTVAGDQKAFELLVIKYQRRIERLIGRMVRDVDLIEDIAQETFIRAYR 82

Query: 64  SATQPQGRASFRTWLFQIARN----RLIDHWRKHGIH----NPLHDSYDEQLHAQADDSA 115
           +  Q +G A F TWL++IA N     L+D  R   +      P  +  DE      + + 
Sbjct: 83  ALHQFRGEAQFYTWLYRIAVNTAKKALVDMKRDPTVSEAALRPSSEDEDETYRPGNEPTT 142

Query: 116 G--PEQQLSLSRDQARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRL 173
              PE  L+ +     ++AA++ LP + R+   LR    +   +IA +   P+ TV+SR+
Sbjct: 143 DETPESVLAANEIARAVEAAMEALPAELRQAVTLREIEGMSYEEIAEVMDCPIGTVRSRI 202

Query: 174 RYAQQKL 180
             A++ +
Sbjct: 203 FRAREAI 209