Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 221 a.a., hypothetical protein from Variovorax sp. SCN45

 Score =  111 bits (277), Expect = 1e-29
 Identities = 80/194 (41%), Positives = 107/194 (55%), Gaps = 18/194 (9%)

Query: 8   PSDEALLARYRTGDSAAFEALYARHRQGLYRFLVSL--SNKAELAEEIYQETWLSLI--R 63
           P D+ +LA Y  GD+AAF+ LYARH  GL+RF+  L  +  A  A+E++Q+TW+ +I  R
Sbjct: 20  PDDQLMLA-YAQGDAAAFDVLYARHEGGLFRFVKRLLGARLAAQADEVFQDTWVRIISAR 78

Query: 64  SATQPQGRASFRTWLFQIARNRLIDHWRKHGIH-----NPLHDS-----YDEQLHAQADD 113
            +  PQG A++RTW F IA N  +D  R  G       +P +DS      D  +    D 
Sbjct: 79  DSFSPQG-ATWRTWAFTIAHNLAMDRLRVSGREVALDAHPDNDSDPVPTLDRGVRGAVDA 137

Query: 114 SAGPE-QQLSLSRDQAR-LDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKS 171
           +A P  ++L+  R   R L A L  LP DQR  FLL     L V  +AA      ETV+S
Sbjct: 138 AAHPSAEELAFWRAAGRRLLACLDELPTDQRAAFLLHHEDGLTVEALAASLEIGFETVRS 197

Query: 172 RLRYAQQKLRRLLA 185
           RLRY  QKLR  +A
Sbjct: 198 RLRYGLQKLRGCMA 211