Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

 Score = 71.2 bits (173), Expect = 1e-17
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 5/180 (2%)

Query: 10  DEALLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSATQPQ 69
           D+ L+ R + GD  AF+ L  +++  +   +V   +    A+++ QE ++   R+    +
Sbjct: 7   DQQLVERVQRGDRRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGNFR 66

Query: 70  GRASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSA-----GPEQQLSLS 124
           G ++F TWL++IA N   ++    G   P  D   E       D        PE+ L   
Sbjct: 67  GDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERSLLRD 126

Query: 125 RDQARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLRRLL 184
             +  +   +Q LPED R    LR    L    IA++   P+ TV+SR+  A++ + + L
Sbjct: 127 EIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKAL 186