Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 203 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 64.3 bits (155), Expect = 1e-15
 Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 6/166 (3%)

Query: 21  DSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSATQPQGRASFRTWLFQ 80
           D  A+  L  R+++ +Y  ++ +   A+ AE++  E +    R+  + +   +F TWLF+
Sbjct: 27  DQQAYATLMKRYKKAVYFMILKMIRDADDAEDLTMEAFAKAFRNLHKFKKDYTFSTWLFR 86

Query: 81  IARNRLIDHWRKH-----GIHNPLHDSYDEQLHAQA-DDSAGPEQQLSLSRDQARLDAAL 134
           IA N  ID  RK       ++N L D     ++    DD   P+ +   S+    +   +
Sbjct: 87  IATNNTIDFIRKKKLKTMSLNNTLTDDGGNSVNIDVEDDDNNPQDEFIKSQRIEMVRIFV 146

Query: 135 QGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKL 180
             LP   R++  LR   +L   +IA     PL TVK++L  +++ L
Sbjct: 147 DKLPAKYRKLVKLRYFDELSYDEIAQELDKPLGTVKAQLHRSRELL 192