Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 200 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 80.9 bits (198), Expect = 1e-20
 Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 5/183 (2%)

Query: 8   PSDEALLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSATQ 67
           P D  L+A+YR G  AAFE L  +++  ++  +  +     LAE++ Q+ ++ +I++   
Sbjct: 7   PKDSELIAQYRNGSEAAFEVLVDKYKSRVFTTIYMIVKDQGLAEDLLQDVFVKVIQTLNS 66

Query: 68  PQ--GRASFRTWLFQIARNRLIDHWRKHGIHN--PLHDSYDEQLHAQADDSAGPEQQLSL 123
            +      F+ WL +IA N  +D++RK   +    + D  +     +  DS   +QQ+  
Sbjct: 67  DRYNEEGKFQPWLMRIAHNLAVDYFRKMKRYPFIMMEDGSNLFNTLKFADSNVEDQQVK- 125

Query: 124 SRDQARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLRRL 183
               A +   +  LPE Q++V ++R + DL   +IA  TG  + T   R+RYA   +R+ 
Sbjct: 126 DETHALVRDLIDELPESQKQVLIMRHYMDLSFQEIADQTGVSINTALGRMRYALINMRKK 185

Query: 184 LAE 186
           L +
Sbjct: 186 LKQ 188