Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 186 a.a., sigma-70 family RNA polymerase sigma factor from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 79.7 bits (195), Expect = 3e-20
 Identities = 59/166 (35%), Positives = 80/166 (48%), Gaps = 6/166 (3%)

Query: 21  DSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSATQ-PQGRASFRTWLF 79
           D  AF AL+A     L  +L+        AE+  Q+  L++ R A      +A   TW+F
Sbjct: 19  DREAFAALFAYFAPRLKAWLIKSGATPGAAEDFAQDAMLTVWRKADLFDSSKARAATWIF 78

Query: 80  QIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSAGPEQQLSLSRDQARLDAALQGLPE 139
            IARNR +D  R+     P       ++    DD   P++ LS+S+D  R+  AL  L  
Sbjct: 79  TIARNRRLDMLRRDARPLPT-----PEIELAGDDVRRPDELLSMSQDADRVRDALARLSA 133

Query: 140 DQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLRRLLA 185
           D  EV  L    D    +IA   G PL TVKSR+R A  KLR +LA
Sbjct: 134 DHVEVLRLAFFMDNSHSEIAKHLGLPLGTVKSRIRNAMTKLRLILA 179