Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 177 a.a., Sigma-K factor from Alteromonas macleodii MIT1002

 Score = 75.1 bits (183), Expect = 7e-19
 Identities = 51/174 (29%), Positives = 81/174 (46%), Gaps = 7/174 (4%)

Query: 13  LLARYRTGDSAAFEALYARHRQGLYRFLVSLSNKAELAEEIYQETWLSLIRSATQPQ-GR 71
           LL +   GD  AF  LY      LY   + L  + ELA+E  Q+ ++ +  +A   Q G+
Sbjct: 9   LLCKTADGDKKAFAELYKITSPQLYAVALRLLKRPELADEATQDAYIKIWHNAGNYQRGK 68

Query: 72  ASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSAGPEQQLSLSRDQARLD 131
            +  TW+  IAR R +D  R H + N +      +L+  A       Q + L  +QA+L 
Sbjct: 69  GTVLTWMVSIARYRALDLIRYHNVRNEV------ELNDDAPSGMETTQSIKLEAEQAKLA 122

Query: 132 AALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLRRLLA 185
           + L  L   QR+   L     +   ++     +PL T+KS +R   Q L+R L+
Sbjct: 123 SCLDELDGPQRQAIHLAYVNGMSHQEVVTHLASPLGTIKSWIRRGLQSLQRCLS 176