Pairwise Alignments

Query, 504 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

Subject, 530 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  181 bits (458), Expect = 7e-50
 Identities = 150/508 (29%), Positives = 234/508 (46%), Gaps = 28/508 (5%)

Query: 3   SRHLKLLAAATLTAWSLTAGLAQAAGVLTIGCREDSTTFDPIKSAQNRDTWVFANVYDTL 62
           +R   + A A L AW++ A   Q  G LT        +  P+ +    +  +   + + L
Sbjct: 11  ARQAAVAAIAVLAAWTVAAQPRQG-GTLTWLVNPVPASIVPLTTTAGGNAEIGPKIVEGL 69

Query: 63  VRVDNLGTKMEPGLAESWDISKDGLTYTFKLRDA-KFSDGSAITADDAAFSLLRIRDNKA 121
           +  D    K +P LA +W  SKDGL YTF+LR   K+ DG   T+ D AFS+L ++    
Sbjct: 70  LTYD-YDLKPKPLLATAWSQSKDGLQYTFELRKGVKWHDGKDFTSADVAFSILTLKQVHP 128

Query: 122 SLWADPFNLINTAKASDPKTLVVTLKTPAVAFLSQLASPTVSILSEKAM--TKMGEDAYS 179
                  N+++  K  D  T V+ L  P+   L+ LAS    I+ +     T +  + Y+
Sbjct: 129 RGRGTFANVVDV-KTPDANTAVIVLSKPSPFLLTALASTESPIVPKHLYEGTDIASNKYN 187

Query: 180 ENPVTSGAFTVDEWRKGDRVILKKNPNFWQAKNVSLDGVEWVSVTDDNTRMRMVQNNELD 239
             PV +G F   EW +G  +IL++NPN+W      LD V    V D   R   +++   D
Sbjct: 188 SAPVGTGPFVFKEWVQGSHIILERNPNYWDKPKPYLDRVVVRFVLDSAARAAALESGAAD 247

Query: 240 TAI---FVPFSRVEELKKDKNVVIHADPST---REDHLLINHEHGLLAKPEVRQALDMAI 293
            A     +P S VE   K   V I    S        +  N +   L K EVR+A+  AI
Sbjct: 248 LANGTGGIPLSDVERFGKLPGVQIDTRISPYLGSHQQIYFNLDTPALQKLEVRRAIAQAI 307

Query: 294 DKQSLVKTATYGQGTVAYSYIPKG-SLYHYANNLQRPYDPTAAKKLLEQAGAK------D 346
           D  +  KT  YG GT++ S I KG S YH A+    P++P  A+  L+ AG K       
Sbjct: 308 DVNAFAKTVWYGYGTLSASPIGKGISRYHDASIQPYPFNPKEAEAALDAAGFKRGAGGTR 367

Query: 347 LKLNYVVNAGNEADEQIAVIIKDQLAKVGVTANLQKVD-PTQSWQMLVDGEYDISVMYWT 405
           LKL  + N   E   + A  ++  L ++G+ A ++  D  T   +   D  +DI++   T
Sbjct: 368 LKLRVLYNPFQE--RRAADFVRQSLGRIGIDATVESYDFATYVTKAYTDRAFDITLESLT 425

Query: 406 NDILDPDQKTTFVLGHDTNQ-----NYMTRYKNDKVKALVAQARIEADPVKREQMYVELQ 460
           N + DP      V      +     +    Y N +V  L+  A +E D  KR Q++V+ Q
Sbjct: 426 N-LFDPTVGVQRVFWSKNFKVGLPFSNAAHYVNPEVDRLLEAAAVEVDEGKRRQLFVDFQ 484

Query: 461 KLAKQDVNWIDLYYSPYINISRKNVSNF 488
            +  +D+  I+L  +P I ++ K V ++
Sbjct: 485 NIVHRDIPSIELGANPAITVATKKVRDY 512