Pairwise Alignments

Query, 315 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

 Score =  198 bits (503), Expect = 2e-55
 Identities = 111/334 (33%), Positives = 181/334 (54%), Gaps = 24/334 (7%)

Query: 6   YRFVLYRPLQLLPVLFGISLITFVLVRSIPGDPARALLGSRST-PDALLKIRAQYGLDQP 64
           + F+  R   L+P  FGI+L+TF L+R IPGDP   ++G R   P+   +   + GL++P
Sbjct: 2   FSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNKP 61

Query: 65  LWLQYFYFLKNLLKGDLGQSLLYKVDALKLIVTRIEPTLVLVLGSVVLALLIAVPLATFA 124
           L+ QY  ++  L +GDLG+SL  +             TL L + +++ A ++ +     A
Sbjct: 62  LYAQYLDYVGKLAQGDLGESLRTRTSVWTEFTALFPATLELSMAALLFAGILGLLAGVIA 121

Query: 125 ARNKGGWADNLIRVFTTVGLGMPAFWLGLMLILLLSVQWGLFPVSGY--------GRT-- 174
           A  +G   D+ +   +  G  MP FW GL+LI+  SV  G  PVSG          RT  
Sbjct: 122 ALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPRTGF 181

Query: 175 -------------WLDKAHHMVLPCLTIALALSAVLVRNLRASMLMELQADHVTAARARG 221
                        + D  HH++LP + +     AV+ R  R+SML  L+ D++  A+A+G
Sbjct: 182 MLIDTLLADEPDAFWDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKAKG 241

Query: 222 LLEAAVFRRHVLPNSLVPAVNLLAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFTRDYM 281
           L  A V   H L N+L+P + ++ + +G L++G V+ E++F+ PGIG+ L+  I  RDY 
Sbjct: 242 LSPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDYP 301

Query: 282 VVQGVAMVLACATVIVNFIADVVTVALDPRVKMQ 315
           VVQ   +++AC  ++VNF+ D++    +PR++ Q
Sbjct: 302 VVQNGILLIACLVILVNFVVDILYGFANPRIRHQ 335