Pairwise Alignments

Query, 315 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 314 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  223 bits (569), Expect = 4e-63
 Identities = 124/313 (39%), Positives = 184/313 (58%), Gaps = 3/313 (0%)

Query: 6   YRFVLYRPLQLLPVLFGISLITFVLVRSIPGDPARALLGSRSTPDALLKIRAQYGLDQPL 65
           + ++L R    +P L  +S+  F L+R IPGDP   +LG  + P  L  +R Q GLDQPL
Sbjct: 2   FAYLLRRIAMTIPTLLLVSIAVFTLMRLIPGDPVLLMLGEGADPAQLALMRHQMGLDQPL 61

Query: 66  WLQYFYFLKNLLKGDLGQSLLYKVDALKLIVTRIEPTLVLVLGSVVLALLIAVPLATFAA 125
            +QY  +L++ L GDLG S    +  L LI  R + + V+VL +V LA LIAVP    AA
Sbjct: 62  PVQYLVWLRHALTGDLGVSTTNGLAVLPLIWERFQVSAVIVLVAVALASLIAVPAGLVAA 121

Query: 126 RNKGGWADNLIRVFTTVGLGMPAFWLGLMLILLLSVQWGLFPVSGY---GRTWLDKAHHM 182
             K    D  I    T+ L +P+FWLGL+L++      G  PV GY      +     ++
Sbjct: 122 WRKDKPTDLAIIGAATLMLSVPSFWLGLLLLMFFGQYLGWLPVVGYVPMSENFSQGVLYV 181

Query: 183 VLPCLTIALALSAVLVRNLRASMLMELQADHVTAARARGLLEAAVFRRHVLPNSLVPAVN 242
           +LP  T+ L  + VL R  RAS +  L+ ++VT ARA+G+ E+ V RRHVLPN+  P + 
Sbjct: 182 ILPIATLLLVETGVLTRMSRASTIEILRLEYVTHARAKGVPESQVLRRHVLPNAFNPTLT 241

Query: 243 LLAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFTRDYMVVQGVAMVLACATVIVNFIAD 302
           ++ + +G L+SG  V+E++F +PG+G+L++  IF RDY V+QG  +  AC  V++N + D
Sbjct: 242 MIGLILGHLLSGIAVLETVFTLPGLGRLMIDSIFARDYPVLQGCLLFTACIYVVINLVVD 301

Query: 303 VVTVALDPRVKMQ 315
           +     DPRV +Q
Sbjct: 302 LCYPLFDPRVSVQ 314