Pairwise Alignments

Query, 315 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 317 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  237 bits (605), Expect = 2e-67
 Identities = 120/317 (37%), Positives = 197/317 (62%), Gaps = 3/317 (0%)

Query: 1   MNLARYRFVLYRPLQLLPVLFGISLITFVLVRSIPGDPARALLGSRSTPDALLKIRAQYG 60
           M  + +R++  R   +L VL  ++++ FVL R+  GDP   LLG ++T   + +++ +YG
Sbjct: 1   MKKSLFRYIASRAAGMLVVLAIVAVLVFVLTRAASGDPVSVLLGDQATAADIARVQKEYG 60

Query: 61  LDQPLWLQYFYFLKNLLKGDLGQSLLYKVDALKLIVTRIEPTLVLVLGSVVLALLIAVPL 120
           LD+PL +Q+ Y+L+ +L+G+LG S+  +    + +  R EPT +L L +V +A LI VP 
Sbjct: 61  LDKPLPVQFGYWLREVLQGNLGTSIFLQRPVTQALWERSEPTTLLALMAVAIAALIGVPC 120

Query: 121 ATFAARNKGGWADNLIRVFTTVGLGMPAFWLGLMLILLLSVQWGLFPVSGYG---RTWLD 177
              +A  +G   D L      +G  +P+FWLG++LI + +V +G FPVSGYG     + +
Sbjct: 121 GIVSAVFRGRVVDQLFTGIAMLGASIPSFWLGIVLIQIFAVSFGWFPVSGYGAPDAPFAE 180

Query: 178 KAHHMVLPCLTIALALSAVLVRNLRASMLMELQADHVTAARARGLLEAAVFRRHVLPNSL 237
           + H +VLP   + L  SA+++R  RASML  L  D+V  AR++GL E+ V  +H L N+L
Sbjct: 181 RLHSLVLPATVLGLLNSALIIRFTRASMLDVLGEDYVRTARSKGLSESVVVLKHALRNAL 240

Query: 238 VPAVNLLAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFTRDYMVVQGVAMVLACATVIV 297
           VP V ++ + +  +I G V+ E++F +PG+G L+V  +  RDY V+QG  +V+A   V++
Sbjct: 241 VPIVTVIGLTVALMIGGAVITETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAAIYVLI 300

Query: 298 NFIADVVTVALDPRVKM 314
           NF  D++   +DPRVK+
Sbjct: 301 NFSIDLLYAVVDPRVKV 317