Pairwise Alignments

Query, 315 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 339 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  203 bits (517), Expect = 4e-57
 Identities = 111/334 (33%), Positives = 185/334 (55%), Gaps = 27/334 (8%)

Query: 7   RFVLYRPLQLLPVLFGISLITFVLVRSIPGDPARALLGSRS-TPDALLKIRAQYGLDQPL 65
           +F+L R   ++P   GI+L+TF  V  IPGDP   + G R  +P+   ++ A+ GLD+P+
Sbjct: 3   QFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPM 62

Query: 66  WLQYFYFLKNLLKGDLGQSLLYKVDALKLIVTRIEPTLVLVLGSVVLALLIAVPLATFAA 125
           W QY +++  +L GDLG SL  ++      V R + TL L + +++ A  + +P+   AA
Sbjct: 63  WQQYLHYIWGVLHGDLGISLKSRLPVWDEFVPRFKATLELGVCAMIFATAVGIPVGVLAA 122

Query: 126 RNKGGWADNLIRVFTTVGLGMPAFWLGLMLILLLSVQWGLFPVSG--------------- 170
             +G   D+        G  MP FW G+MLI+L+SVQ  L PVSG               
Sbjct: 123 VKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVQLNLTPVSGRVSDMVFLDDSNPLT 182

Query: 171 ---------YGR--TWLDKAHHMVLPCLTIALALSAVLVRNLRASMLMELQADHVTAARA 219
                    +G    ++D   HM+LP + +     AV+VR  R+SML  L  D++  ARA
Sbjct: 183 GFMLIDTAIWGEEGNFIDAVAHMILPAMVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARA 242

Query: 220 RGLLEAAVFRRHVLPNSLVPAVNLLAVNIGWLISGTVVIESLFAIPGIGQLLVRGIFTRD 279
           +GL    V   H L N+++P V ++ + +G L++G ++ E++F+ PG+G+ L+  +  RD
Sbjct: 243 KGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRD 302

Query: 280 YMVVQGVAMVLACATVIVNFIADVVTVALDPRVK 313
           Y VVQG  +++A   ++VN + D++   ++PR++
Sbjct: 303 YPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336