Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

Subject, 1194 a.a., transcription-repair coupling factor from Rhodanobacter sp. FW510-T8

 Score = 1275 bits (3298), Expect = 0.0
 Identities = 651/1188 (54%), Positives = 837/1188 (70%), Gaps = 48/1188 (4%)

Query: 2    PVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFF 61
            P+   PL      +++W    G+A +L +AEAA   +   +++  D+Q A+ LE EL  F
Sbjct: 4    PIKHPPLPTTPRQRRYWTPPHGSARALLLAEAARTHEGLLVVVARDTQRAQALEAELKIF 63

Query: 62   APDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPTK 121
            A  LPVLHFPDWETLPYD+FSPH +I+SQRIA+LYRLP +  GVLVVP+ T + R+AP  
Sbjct: 64   AGGLPVLHFPDWETLPYDVFSPHPEIVSQRIATLYRLPNVKRGVLVVPVATLMQRIAPRS 123

Query: 122  FLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYR 181
             + GS LVL  GQKLD+   + RLEASGYR V  V E G+FAVRGAL+D+FPMG+  PYR
Sbjct: 124  HITGSGLVLAKGQKLDLAGEQRRLEASGYRHVPQVAEPGDFAVRGALLDIFPMGTAEPYR 183

Query: 182  IDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFRR 241
            I+LFDDE++++R+FDPE QRS  +VD V LLPAREFPL ++A   F+   RERF +D RR
Sbjct: 184  IELFDDEVDSIRSFDPETQRSQQQVDKVDLLPAREFPLTEEAAKEFRGNLRERFPIDVRR 243

Query: 242  CPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNR 301
            CP++QD+  G+TP GIEYYLPLFF +T+TLFDYL  D       G  +AA+ FW     R
Sbjct: 244  CPLYQDMKEGVTPGGIEYYLPLFFPQTATLFDYLADDALFVLGEGAGEAADQFWAQTAER 303

Query: 302  YEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGAGRERFPAATLPDLA 361
            Y++R  D  RP+LPPAEL+LP E    +L    RV       E        PA   P+L 
Sbjct: 304  YDQRAHDIERPVLPPAELYLPAEKLREQLNKRLRVEVVDAGHEHAVDSGTQPA---PELP 360

Query: 362  IQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVK-- 419
            +  K  +P  +L  FL  +PGRVL  A+SAGRRE L+E L    L+P+ V+ W  F+   
Sbjct: 361  LNRKGEEPGTSLRYFLTSYPGRVLIAADSAGRREALIETLAAAGLKPQNVEGWSTFLLPL 420

Query: 420  -----------------------------------------SKERLAITIAPLDEGLLLD 438
                                                        + AITIA L++G  L 
Sbjct: 421  PAGGGREGVARTGEEAKAPLPPQGIPFGHNPPLQAGEEAKYEGPKFAITIAGLEQGFALT 480

Query: 439  DPALALIAESPLFGQRVMQRRRREKRADANND--AVIKNLTELREGAPVVHIDHGVGRYL 496
             PA+ ++ E  L+G+RV   R R++R     D  A+I++LTEL  GAP+VH+DHGVGRY 
Sbjct: 481  KPAITVLTERELYGERVRSERDRKRRRGTARDPEAIIRDLTELTPGAPIVHVDHGVGRYQ 540

Query: 497  GLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDALAPLHRLGSETWQKAK 556
            GL ++++     EFLT+EYA+G KLYVPVA L L++RY+G+   LAPLH LG + W++A+
Sbjct: 541  GLVSMDVGGMDGEFLTIEYAKGDKLYVPVAQLGLVSRYSGTAPELAPLHSLGGDAWERAR 600

Query: 557  RKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFAFEETPDQQTTIEAVRA 616
            RKAAE+VRDVAAELL IYA+R AR G +    +     F + F FEETPDQ++ IEAV  
Sbjct: 601  RKAAEKVRDVAAELLAIYAQRQARGGESLPIDRQLVEEFGSTFPFEETPDQESAIEAVLN 660

Query: 617  DMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQHYNSFRDRFA 676
            D+ AP+ MDR++CGDVGFGKTEVA+RAAF     G+QVA+LVPTTLLAQQHY +F DRFA
Sbjct: 661  DLAAPRAMDRVICGDVGFGKTEVALRAAFATATAGRQVAVLVPTTLLAQQHYRNFADRFA 720

Query: 677  DWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDVKIKNLGLVIIDEEHRF 736
            DWPV V+V+SRFKS KEVN A+  LA+G+ID+++GTHKLL  D+K +NLGLVI+DEE RF
Sbjct: 721  DWPVRVDVLSRFKSTKEVNEALKRLADGQIDVIVGTHKLLQPDIKFRNLGLVIVDEEQRF 780

Query: 737  GVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQN 796
            GVRQKEQLK LR+EVD+LT+TATPIPRTLNMA++G+RDLS+IATPPA R +VRTF+   +
Sbjct: 781  GVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMAGLRDLSLIATPPAHRSAVRTFISAWD 840

Query: 797  KSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIAIGHGQMRERELEQVM 856
             +T++EAL REL RGGQVY+LHN+V++IE+   +L  LVP+ARI + HGQM ERELE VM
Sbjct: 841  PATIREALQRELSRGGQVYFLHNEVQSIERTVRELEGLVPDARIRVAHGQMPERELEGVM 900

Query: 857  SDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYL 916
            +DF+ +RFNVL+ +TIIETGID+P+ANTIII+RAD+FGLAQLHQLRGRVGRSHH+AYAYL
Sbjct: 901  ADFHRQRFNVLVCTTIIETGIDIPTANTIIIDRADRFGLAQLHQLRGRVGRSHHRAYAYL 960

Query: 917  LTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQIQAVGFTL 976
            + P R+ IT+DA+KRLEA+A+ ++LGAGF LAT+DLEIRGAGELLGD QSGQIQ +GF L
Sbjct: 961  VVPDRRSITADAQKRLEALASLEELGAGFTLATHDLEIRGAGELLGDEQSGQIQEIGFGL 1020

Query: 977  YMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEEYLPDVHARLILYKRIASAT 1036
            Y E+L+RAV+A++ G+ P+ D       E+ L LPALIP++YLPDVHARL LYKR+ASA 
Sbjct: 1021 YTELLDRAVRALKSGKVPDFDLSSEHETEVELHLPALIPDDYLPDVHARLTLYKRVASAR 1080

Query: 1037 DEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKVDAGPQGGRIEFEAQTP 1096
             E+ L+DLQVEMIDRFGLLP+ TK L  +  LKL A  LGI+K+D G  GGRI F  +  
Sbjct: 1081 SEDELRDLQVEMIDRFGLLPDSTKQLFAVASLKLMATPLGIRKLDFGANGGRIVFREKPE 1140

Query: 1097 VDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEALFERL 1144
            VDP+ +IKLIQ  P  YK +G    K ++ +  A ER  + + +   L
Sbjct: 1141 VDPMTIIKLIQQLPRVYKLDGQDKLKVILDLPGASERIRSAQEVLVAL 1188