Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

Subject, 1160 a.a., Transcription-repair coupling factor from Variovorax sp. SCN45

 Score = 1120 bits (2898), Expect = 0.0
 Identities = 590/1094 (53%), Positives = 756/1094 (69%), Gaps = 13/1094 (1%)

Query: 24   AALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFPDWETLPYDLFSP 83
            A L   +A    AA R T + TAD+  A+RL  E++FFAP+L    FPDWETLPYD FSP
Sbjct: 23   ALLLAQLAMREKAAGRATAMFTADANDAQRLIDEIAFFAPELRCALFPDWETLPYDSFSP 82

Query: 84   HQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPTKFLLGSSLVLDIGQKLDVEQMRT 143
            HQD+IS+R+A+L+R+ +    V++VP TTAL+RLAP  FL G +      QKL+  +++ 
Sbjct: 83   HQDLISERLATLWRISQKEADVVLVPATTALYRLAPPAFLAGYTFHFKAKQKLEESKLKA 142

Query: 144  RLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDEIETLRTFDPENQRSI 203
            +L  +GY  V  V   GE+AVRG LIDLFPMGS +P+R+DLFDDEI+++RTFDP+ QRS+
Sbjct: 143  QLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSPVPFRVDLFDDEIDSIRTFDPDTQRSL 202

Query: 204  DKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFRRCPIFQDLSSGITPAGIEYYLPL 263
              V  V+LLP REFP+ +DA  RF+ R+RE  + D  +  I++D+ +G+  AGIEYYLPL
Sbjct: 203  YPVPEVRLLPGREFPMDEDARGRFRGRWRELLEGDPTKSRIYKDMGNGVATAGIEYYLPL 262

Query: 264  FFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEERRVDPSRPLLPPAELFLPV 323
            FFDET+T+FDYL  D  V     +E A ++FW D   RY   R DP RP LPP  LFL  
Sbjct: 263  FFDETATVFDYLGPDATVVLHGDLEPAFQHFWQDTNERYRLVRGDPERPALPPEALFLNA 322

Query: 324  EDCFARLKSWPRVVASQQDVETGAGRERFPAATLPDLAIQAKATQPLEALSNFLGDFPGR 383
            E  + R K   ++ A + DV T A    F    LP  A+   A  PL  L   +   P R
Sbjct: 323  EQFYQRAKPHAQL-AIRGDVPTEAPYAEFDR--LPPFAVVRGAEDPLVGLKAHIAKTPHR 379

Query: 384  VLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVKSK-ERLAITIAPLDEGLLLDDPAL 442
            VL  AES GRRE LL+ L    + P   DS  +F  S  E++ I  A L  G    +  +
Sbjct: 380  VLLIAESDGRRESLLDFLRASGVNPPAFDSLAEFEASADEKVGIATAALASGFAWREQGI 439

Query: 443  ALIAESPLFGQRVMQRRRREKRADANN-DAVIKNLTELREGAPVVHIDHGVGRYLGLQTL 501
             L+ E+ LF      RRR +K+   ++ +A+IK+L+EL  G PVVH  HG+GRY GL  +
Sbjct: 440  DLVTETELFATAPTTRRRNKKQEQVSDVEALIKDLSELNVGDPVVHTAHGIGRYRGLIHM 499

Query: 502  EIDNQA--------AEFLTMEYAEGAKLYVPVANLHLIARYTGSDDALAPLHRLGSETWQ 553
            ++             E L +EYA+ A LYVPV+ LH I+RYTG     APLH+LGS  W+
Sbjct: 500  DLGQGTDAEGKPLLQEMLHLEYADKATLYVPVSQLHQISRYTGVSADEAPLHKLGSGQWE 559

Query: 554  KAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFAFEETPDQQTTIEA 613
            KAKRKAAEQVRD AAELL+IYARRAAREG+AF    ADY  F+  F F+ET DQ+  I A
Sbjct: 560  KAKRKAAEQVRDSAAELLNIYARRAAREGHAFRYSPADYEVFANDFGFQETADQKAAIHA 619

Query: 614  VRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQHYNSFRD 673
            V  DM++P+PMDRLVCGDVGFGKTEVA+RAAFIAV GGKQVA L PTTLLA+QHY +  D
Sbjct: 620  VVQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAVTGGKQVAFLAPTTLLAEQHYQTLVD 679

Query: 674  RFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDVKIKNLGLVIIDEE 733
            RFA WPV V  MSRF+SAKE+ AA   LAEG++DIV+GTHKLLS  VK KNLGL+IIDEE
Sbjct: 680  RFAKWPVKVAEMSRFRSAKEITAAAKGLAEGQVDIVVGTHKLLSQSVKFKNLGLLIIDEE 739

Query: 734  HRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVM 793
            HRFGVR KE +KA+R+EVD+LTLTATPIPRTL MA+ G+RDLS+IAT P RRL+++TFV 
Sbjct: 740  HRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVR 799

Query: 794  EQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIAIGHGQMRERELE 853
             +    ++EA+LREL RGGQVY+LHN+V+TIE     L E++PEARIA+ HGQM ERELE
Sbjct: 800  NEGTGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILPEARIAVAHGQMPERELE 859

Query: 854  QVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAY 913
            +VM DF  +R+N+L+ STIIETGIDVP+ANTI++ RADKFGLAQLHQLRGRVGRSHHQAY
Sbjct: 860  RVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFGLAQLHQLRGRVGRSHHQAY 919

Query: 914  AYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQIQAVG 973
            AYL+ P  + +T  A +RL+AI   ++LG+GF LA +DLEIRG GE+LG+ QSG +  +G
Sbjct: 920  AYLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEIRGTGEVLGESQSGNMTEIG 979

Query: 974  FTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEEYLPDVHARLILYKRIA 1033
            F LY EML  AV+A++ G++P+L  PL    EINL  PAL+P++Y  DVH RL  YK++A
Sbjct: 980  FQLYNEMLSEAVRALKAGQEPDLLSPLSVTTEINLHAPALLPDDYCGDVHLRLSFYKKLA 1039

Query: 1034 SATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKVDAGPQGGRIEFEA 1093
            +A   + +  L  E++DRFG LP   + L+    L++ A   G+ KVDA P    I F+ 
Sbjct: 1040 TAKTPDQIDTLLEEIVDRFGKLPPQAQTLIDTHRLRVLARPYGVVKVDAAPGIINITFKK 1099

Query: 1094 QTPVDPLVLIKLIQ 1107
              PVD + +I+LIQ
Sbjct: 1100 DPPVDGMAIIQLIQ 1113