Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score = 2035 bits (5271), Expect = 0.0
 Identities = 1026/1149 (89%), Positives = 1081/1149 (94%)

Query: 1    MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF 60
            M VLRLP + A AGKQ WGNLPGAALSLAIAEAAS+A RFTLLLTADSQ+A+RLEQEL F
Sbjct: 1    MSVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRF 60

Query: 61   FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT 120
            FAPDLPVL FPDWETLPYDLFSPHQDIISQRIASLYRLPEL+HG+LVVPITTALHRLAPT
Sbjct: 61   FAPDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPT 120

Query: 121  KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY 180
            +FLLGSSLVLD+GQ +DVEQMR RLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
Sbjct: 121  RFLLGSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY 180

Query: 181  RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFR 240
            RIDLFD+EIETLRTFDPE QRSIDKVDSV+LLPAREFP+QK+ VTRFKARFRERFDVDFR
Sbjct: 181  RIDLFDNEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFR 240

Query: 241  RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN 300
            R  IFQDL+SGI PAGIEYYLPLFF+ETSTLFDYLP DTQVFSLPG+EQAAE+FWNDVR 
Sbjct: 241  RSAIFQDLASGIIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRG 300

Query: 301  RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGAGRERFPAATLPDL 360
            RYE+RR D SRPLLPPAELFLPVEDCFARLK WPRVV S +++E G GRERFPA  LP+L
Sbjct: 301  RYEDRRGDLSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERFPARALPNL 360

Query: 361  AIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVKS 420
            AI+AKA QPL  L+NFL  FPGRVLFTAESAGRREVLLELLERLKLRP TV+ W DF+  
Sbjct: 361  AIEAKANQPLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFITG 420

Query: 421  KERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR 480
             ERLAITIAPLD+GLLLDDP LALIAESPLFGQRVMQRRRR+KR +  NDAVIKNLTELR
Sbjct: 421  AERLAITIAPLDDGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELR 480

Query: 481  EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA 540
            EGAPVVHIDHGVGRYLGL TLEID QAAEFLT+EYAE AKLYVPVANLHLIARYTGSDDA
Sbjct: 481  EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA 540

Query: 541  LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA 600
            LAPLHRLGSE WQKAKRKAAEQVRDVAAELLDIYARRAAR+GYAFADP ADYATFSAGF 
Sbjct: 541  LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFP 600

Query: 601  FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT 660
            FEETPDQQ  IEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVH G+QVA+LVPT
Sbjct: 601  FEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT 660

Query: 661  TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV 720
            TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEV AA ADLAEGKIDI+IGTHKLL DDV
Sbjct: 661  TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDV 720

Query: 721  KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT 780
            + K+LGL IIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAV+GMRDLSIIAT
Sbjct: 721  RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT 780

Query: 781  PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI 840
            PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
Sbjct: 781  PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI 840

Query: 841  AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ 900
             IGHGQMRERELEQVMSDFYHKRFNVL+ASTIIETGIDVPSANTI+IERADKFGLAQLHQ
Sbjct: 841  GIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQ 900

Query: 901  LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL 960
            LRGRVGRSHHQAYAYLLTP RQ++++DAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
Sbjct: 901  LRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL 960

Query: 961  LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEEYLP 1020
            LG+GQSGQIQAVGFTLYMEMLERAVKAIRKG QPNL+QPLGGGPEINLRLPALIPE+YLP
Sbjct: 961  LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLP 1020

Query: 1021 DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV 1080
            DVHARLILYKRIASA DEEGLKDLQVEMIDRFGLLPEPTKNL+RLT LKL AE+LGIKKV
Sbjct: 1021 DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKV 1080

Query: 1081 DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL 1140
            DAGP GG++EFEA+TPVDPL LIKLIQGQP RYKFEGAT F+F+VPMER +ERFNTLEAL
Sbjct: 1081 DAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEAL 1140

Query: 1141 FERLIPKSA 1149
            FERL P+ A
Sbjct: 1141 FERLTPQPA 1149