Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

Subject, 1213 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

 Score =  757 bits (1955), Expect = 0.0
 Identities = 458/1135 (40%), Positives = 649/1135 (57%), Gaps = 49/1135 (4%)

Query: 8    LLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTA-DSQSAERLEQELSFFAPDLP 66
            L P  AG+   G  P    +  +AE A  A  + LL  A D      L + L+FFAP L 
Sbjct: 6    LQPGRAGRLLIGGAPEGHDARILAELAQKAGGYGLLHVALDDTRCALLAEALAFFAPKLE 65

Query: 67   VLHFPDWETLPYDLFSPHQDIISQRIASLYRL----------PELAHGVLVVPITTALHR 116
            VL FP W+ LPYD  SP+  I+++RI +L RL            LA  +++  +   + +
Sbjct: 66   VLTFPAWDCLPYDRVSPNGGIVARRIDTLTRLIARRDAASNRDGLAPLIVLTTVNAVVQK 125

Query: 117  LAPTKFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGS 176
            + P      +     +  ++D+E+++  L  +GY    TV E GEFAVRG ++DLFP G+
Sbjct: 126  VPPRSAFKNAVFSAKLRDRIDLEKLQRYLAGNGYTRAQTVREPGEFAVRGGIVDLFPPGT 185

Query: 177  KLPYRIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFD 236
            + P R+DLF DE+E +R FDP  QR+ DK DSV+L P  E  L    + RF++ +RE F 
Sbjct: 186  EEPLRLDLFGDELEGVRAFDPMTQRTTDKRDSVELKPMSEVFLDDAGIARFRSGYRELFG 245

Query: 237  VDFRRCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFW- 295
                  P+++ +S+G +  G+E++LPLF +   T+ DYLP+   + SL      A +   
Sbjct: 246  AVTDDDPLYEAISAGRSYGGMEHWLPLFHESMDTVLDYLPRG--IVSLDHQANEARDARI 303

Query: 296  ---------NDVRNRYEERRVDPSRPLLPPAELFLP--------VEDCFARLK--SWPRV 336
                      D     E+R   P    +P A +FL          E   A+L+  S P  
Sbjct: 304  AQVVDFHASRDGMMTIEKRAGSPVYKPVPVASMFLDGIGWDALLAERAVAQLQIFSTPPG 363

Query: 337  VASQQDVETGAGRERFPAATLPDLAIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREV 396
            +    D     G +       PD+ +       + AL         RVL    SAG R+ 
Sbjct: 364  IKGTVDAGGKRGHDFAEERNRPDVNVFDAVKDHIRALRAD----GRRVLIAGYSAGSRDR 419

Query: 397  LLELLERLKLRPKTVDSWPDFVKSKER--LAITIAPLDEGLLLDDPALALIAESPLFGQR 454
            L  +L    +         + V+  +R  +   +  ++ G    D  LA+I E  + G R
Sbjct: 420  LSNVLADHGIPGLEPAESMEDVRRFDRGIIGTIVLGMEHGFTSAD--LAVITEQDILGDR 477

Query: 455  VMQRRRREKRADANNDAVIKNLTELREGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTME 514
            ++ R  ++KR  AN    I   + L EG  VVH+DHG+GRY GL+TL++     + L + 
Sbjct: 478  LV-RPAKKKRKAAN---FIAEHSALHEGDIVVHMDHGIGRYDGLETLDVTGAPHDCLRLI 533

Query: 515  YAEGAKLYVPVANLHLIARYTGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIY 574
            Y  G KLYVPV N+ +++RY GS+DA   L +LG   WQ  K +  ++++D+A  LL I 
Sbjct: 534  YEGGDKLYVPVENIEVLSRY-GSEDANVQLDKLGGAGWQGRKARVKKRLKDMAEALLKIA 592

Query: 575  ARRAAREGYAFADPKADYATFSAGFAFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGF 634
            A R  ++      P+  Y  F+A F + ET DQ   IE +  D+ + +PMDRLVCGDVGF
Sbjct: 593  AERMLKKADPVLTPEGVYQEFAARFPYPETDDQLKAIEDIFTDLGSGRPMDRLVCGDVGF 652

Query: 635  GKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEV 694
            GKTEVA+RAAF+    GKQVA++VPTTLLA+QH+ +F  RF   PV V  +SR  +A+E 
Sbjct: 653  GKTEVALRAAFMVAMSGKQVAVVVPTTLLARQHFRTFSTRFNGLPVRVVQLSRMVTAREQ 712

Query: 695  NAAIADLAEGKIDIVIGTHKLLSDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDIL 754
                 +LAEG  DIV+GTH LL+  +  K LG+VI+DEE  FGV+QKE+LK LR+++ +L
Sbjct: 713  TLVKKELAEGTADIVVGTHALLAKGLDFKRLGMVIVDEEQHFGVKQKERLKELRADIHVL 772

Query: 755  TLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQV 814
            TLTATPIPRTL MA+SG+R+LS+IATPP  RL+VRTFV+  +   ++EA+LRE  RGGQ 
Sbjct: 773  TLTATPIPRTLQMALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRGGQS 832

Query: 815  YYLHNDVKTIEKCAADLAELVPEARIAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIE 874
            +Y+   V+ + K A  + ELVPE +I   HGQM   ELE VM+ F   +F VL+A+ IIE
Sbjct: 833  FYVCPRVEDLAKVAERVRELVPEVKIVTAHGQMPASELEDVMTAFDEGKFEVLLATNIIE 892

Query: 875  TGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEA 934
            +G+D+P+ANT+I+ RAD FGLAQL+Q+RGRVGRS  + YAYL   P + ++  A++RL  
Sbjct: 893  SGLDIPNANTLIVHRADLFGLAQLYQIRGRVGRSKKRGYAYLTYAPNKPLSGTAQQRLHV 952

Query: 935  IANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQP 994
            I     LGAGF LA++D++IRGAG LLG+ QSGQ++ VG  LY +MLE AV + R   Q 
Sbjct: 953  IETLDSLGAGFQLASHDMDIRGAGNLLGEEQSGQVREVGVELYQQMLEEAVASARASMQE 1012

Query: 995  NLDQPLGGG---PEINLRLPALIPEEYLPDVHARLILYKRIASATDEEGLKDLQVEMIDR 1051
                        P+INL  P LIPE Y+PD+  RL LY+RIA   D   +     E+IDR
Sbjct: 1013 GAVAAAAAQEWVPQINLGTPVLIPESYVPDLTVRLSLYRRIADLVDRAEVDGFAAELIDR 1072

Query: 1052 FGLLPEPTKNLVRLTLLKLQAEQLGIKKVDAGPQGGRIEFEAQTPVDPLVLIKLI 1106
            FG LPE  +NL+ +  +K   +Q  I +VDAGP+G  + F      +P  L+  I
Sbjct: 1073 FGKLPEEVENLLDVVTIKRWCKQANIDRVDAGPKGLVLAFHDNFYAEPAKLLTYI 1127