Pairwise Alignments

Query, 358 a.a., 23S rRNA methyltransferase from Pseudomonas simiae WCS417

Subject, 365 a.a., Ribosomal RNA large subunit methyltransferase M from Alteromonas macleodii MIT1002

 Score =  233 bits (593), Expect = 8e-66
 Identities = 142/353 (40%), Positives = 202/353 (57%), Gaps = 13/353 (3%)

Query: 7   HCRPGFEGEVCSEIAEHAARLNVSGYAKAKTGSACAEFVCTEEDGAQRLMHGQRFA--EL 64
           +CRPG+E +  +E+          GY  +K  S    +     DG+Q      +FA  + 
Sbjct: 9   YCRPGYENDTANELTSRYGEAQCYGYPVSKKNSGFVLYHLY--DGSQLEQTITQFAVHDS 66

Query: 65  IFPRQWAR--GVFIDLPETDRISVILAHLRE----FPVCGSLWLEMVDTNDGKELSNFCK 118
           IFPRQ         D+ + DR+  +L  L+E    F + G++ +E  DT +GK L+ FC+
Sbjct: 67  IFPRQLVAVFATLNDIEKLDRVGQVLEALKEVEKPFQIFGAIDVEYPDTEEGKTLAKFCR 126

Query: 119 KFEVHLRKALLNAGTLV--DDPSKPRLLLTFKSGREVFMGLAESNNSAMWPMGIPRLKFP 176
           KF V LR+AL  AG L   ++  KP+L + F+S     +G    ++++   +GI RLKFP
Sbjct: 127 KFTVPLRQALRKAGWLTAKENLGKPKLHIFFESFEICHIGYTLPSHASGDHLGICRLKFP 186

Query: 177 REAPSRSTLKLEEAWHHFIPRDQWDERLHGDMTGVDLGAAPGGWTWQLVNRGMLVTAIDN 236
            +APSRSTLKLE+A  + +   Q  + L      VDLGA PGGWT+QLV RGM V AIDN
Sbjct: 187 SDAPSRSTLKLEDALVNMLSDKQQAKVLRSGGRAVDLGACPGGWTYQLVKRGMYVEAIDN 246

Query: 237 GPMAESLMDTGLVQHLMADGFTFVPK-QPVDWMVCDIVEKPARNAALLETWIGEGYCREA 295
           G +A+SLM TGLV+H  ADGFT+ P+   VD +VCD++E+P R A L+  W+ + +   A
Sbjct: 247 GLVADSLMSTGLVEHHAADGFTYRPQFGRVDLLVCDMIEQPDRVAKLMGDWLVKHWATHA 306

Query: 296 VVNLKLPMKQRYAEVKRLLERIEDGFKARGVRVEIGCKQLYHDREEVTCHLRR 348
           + NLKLPMKQRY  V   +  +     A      +  + LYHDR+EVT  + R
Sbjct: 307 IFNLKLPMKQRYETVVEAMTLLRGRLNALEDAFAVKVRHLYHDRDEVTVTIVR 359