Pairwise Alignments

Query, 296 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 291 a.a., putative efflux pump from Pseudomonas putida KT2440

 Score =  469 bits (1208), Expect = e-137
 Identities = 234/296 (79%), Positives = 264/296 (89%), Gaps = 5/296 (1%)

Query: 1   MKKPFLTIGRVVLTLLIVTFAVVVVWRMVMYYMFAPWTRDGHIRADIVQIAPDVSGLIQR 60
           MKKP LT+GRVVLTLL+VTFA V+VW+MV+YYMFAPWTRDGHIRAD++QIAPDVSGLIQ+
Sbjct: 1   MKKPLLTLGRVVLTLLVVTFAAVLVWQMVVYYMFAPWTRDGHIRADVIQIAPDVSGLIQK 60

Query: 61  VDVRDNQLVTKGQVLFAVDQDRFKLALRQAQAAVADRQETLAQAQREYKRNRGLGNLVPS 120
           V+VRDNQ V +G VLF +DQDRF LALRQA+A + +RQETLAQA RE +RNR LGNLV +
Sbjct: 61  VEVRDNQTVKRGDVLFTIDQDRFTLALRQAKATLGERQETLAQASREAQRNRKLGNLVAA 120

Query: 121 EQLEESQSRVARAQSALAEAQVTVDSAQLNLDRSVIRSPVDGYVNDRAPRTQEFVTAGRP 180
           EQLEESQSR ARA+SA++EAQV VD+AQLNLDRSV+RSPVDGY+NDRAPR  EFVTAGRP
Sbjct: 121 EQLEESQSREARARSAVSEAQVAVDTAQLNLDRSVVRSPVDGYLNDRAPRNHEFVTAGRP 180

Query: 181 VLSVVDSNSFHIDGYFEETKLDGIHVGMGVDIRVIGDNARLHGHVQSIVAGIEDRDRSSG 240
           VLSVVDS S+H+DGYFEETKL GIH+G  VDIRV+GDN RL GHVQS  AGIEDRDRSSG
Sbjct: 181 VLSVVDSASYHVDGYFEETKLGGIHIGDAVDIRVMGDNTRLRGHVQSFAAGIEDRDRSSG 240

Query: 241 SNLLPNVNPAFSWVRLAQRIPVRIAFDDVPADFRMIAGRTATVSIIGDKVKDGDKP 296
           +NLLPNVNPAFSWVRLAQRIPVRIAFD+VP DFRMIAGRTATVSII     +G +P
Sbjct: 241 ANLLPNVNPAFSWVRLAQRIPVRIAFDEVPQDFRMIAGRTATVSII-----EGQRP 291