Pairwise Alignments

Query, 240 a.a., Transcriptional regulator of deoxyribose catabolism (from data) from Pseudomonas simiae WCS417

Subject, 231 a.a., DNA-binding transcriptional repressor from Pseudomonas putida KT2440

 Score = 59.3 bits (142), Expect = 6e-14
 Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 28/219 (12%)

Query: 24  YRQIREALMSGRFQPGQKLTIRGLAEALGSSPMPVREALQRLSAENAFEVTETSRLRVRL 83
           Y ++++ ++ G F+PG+KL +  L E       P+REAL +L AE+          RV  
Sbjct: 15  YERLKKDIIRGVFKPGEKLLMSTLKERYDLGVGPLREALSQLVAEHLVNAISQKGYRVAP 74

Query: 84  MTVERLREIRDARVALEGLL----------AEKAVLLLQKADLDEITDLCQQMQ------ 127
           M+++ + +I DAR  LE ++          A +A +L     L ++ ++  + Q      
Sbjct: 75  MSLDEMNDIYDARANLEAMIIALAIERGDDAWEASVLAHSHTLAKVVEVKTREQRLDVWD 134

Query: 128 --HAADEVDVSRYLWTNFAFHRRIYAVAQAELTMAAVENFWLHMGPCFALVAPDKAHLQR 185
             H A    ++    +      R Y   QAE       + WL       + + +   L+R
Sbjct: 135 ERHKAFHTAIASGCGSKHLLQARTYLFDQAE----RYRHLWLTQ----TVFSEEALALKR 186

Query: 186 SMEAHTRIVEALAARDGGGARAAVTDDIMQAADSLARLL 224
             + H  +VE + ARD   A A +   +M     +A+++
Sbjct: 187 --QEHAALVEVILARDAKTASAMMRSHLMTPVPIIAQIM 223