Pairwise Alignments

Query, 320 a.a., RNA polymerase sigma-H factor AlgU from Pseudomonas simiae WCS417

Subject, 321 a.a., Sigma factor AlgU regulatory protein MucB from Pseudomonas putida KT2440

 Score =  390 bits (1001), Expect = e-113
 Identities = 193/323 (59%), Positives = 248/323 (76%), Gaps = 6/323 (1%)

Query: 1   MRAIPLLTLLLSGCFALPAHA----DEAQDWLTRLGRAEQQQSFQGTFVYERNGSFSTHD 56
           MRA+PLL+LL+  C  +PA A     EA +WL +L +AEQ+QS+QG+FVYERNGSFS+HD
Sbjct: 1   MRALPLLSLLIGSCMTVPALAANSSPEASEWLNKLAQAEQKQSYQGSFVYERNGSFSSHD 60

Query: 57  IWHRVQEGQVRERLLQLDGSAQEVVRLDGRTQCVSGTLVAGLGNSRDAPSRALDPQKLKQ 116
           IWHRV +G+V ERLLQLDG+AQE+VR+DG+ +CVSG L +G+    D   R LDP KL  
Sbjct: 61  IWHRVDDGKVSERLLQLDGAAQEIVRVDGKVECVSGALASGVTAPPDTAPRVLDPLKLMG 120

Query: 117 FYELAVIGKSRVAGRNAVIVSITPRDQYRYGFELHLDRETALPLKSLLLNDQGQLLERFQ 176
           +Y+L+V GKSRVAGR+AVI+++TPRDQ+RY FELHLDR + LPL+SL+LND+GQLLERFQ
Sbjct: 121 WYDLSVAGKSRVAGRDAVIITLTPRDQHRYAFELHLDRHSGLPLRSLMLNDKGQLLERFQ 180

Query: 177 FTRLNTSVVPDDRDLQPSSECAPLSVANEKAPVVQPTEAWHLEWLPPGFQLTSTSSRKDT 236
            TRL+T  +P D DL+P + C P  V +  A        W  +WLPPGF+L ++S R+D 
Sbjct: 181 MTRLDTDEIPSDADLRPGAACKP--VQHVAAGSNDAVAGWRSDWLPPGFELVNSSVRRDP 238

Query: 237 QTKATVDSLMYEDGLARFSVFLEPISDASVTETRTQLGPTVAVSRRLNTVDGEMMVTVVG 296
           +  ++V SLMY+DGLARFSVF+E +SD   T+ RTQLGPT AVSRRLNT  G++MVTVVG
Sbjct: 239 KHNSSVSSLMYDDGLARFSVFIEQVSDDGGTDMRTQLGPTSAVSRRLNTPKGKVMVTVVG 298

Query: 297 EIPIGTAERIALSVRGEKKPAVQ 319
           EIP+GTAER+ALS+R +   A Q
Sbjct: 299 EIPLGTAERVALSMRPQDAQARQ 321