Pairwise Alignments

Query, 195 a.a., RNA polymerase sigma-H factor AlgU from Pseudomonas simiae WCS417

Subject, 196 a.a., Sigma factor AlgU negative regulatory protein from Pseudomonas putida KT2440

 Score =  311 bits (798), Expect = 4e-90
 Identities = 167/199 (83%), Positives = 178/199 (89%), Gaps = 7/199 (3%)

Query: 1   MSRDALQESLSAVMDNEADELELRRVLNAFDDAETRDTWSRYQVARAVMHKDLLIPRLDI 60
           MSR+ALQESLSAVMDNEADELELRRVLNA DDAETR TWSRYQVARA MHK+LL+P LDI
Sbjct: 1   MSREALQESLSAVMDNEADELELRRVLNAVDDAETRATWSRYQVARAAMHKELLLPNLDI 60

Query: 61  AAAVSAALADEAVPAKAARGPWRSLGRLAVAASVTVAVLAGVRLYNQDEIAGAELAQQTQ 120
           A+AVSAALADEAVPAK  +GPWRS+GRLAVAASVTVAVLAGVR+YNQDEI GAELA   Q
Sbjct: 61  ASAVSAALADEAVPAKVKKGPWRSIGRLAVAASVTVAVLAGVRMYNQDEITGAELA--AQ 118

Query: 121 QPVMAG---PQVKGPAVLAGYKESSD-TTGPMANGVLQGQSGWQDQRLPGYLRQHAQESA 176
           QPV  G   PQ +GPAVLAGY ESS+  TGPMANGVLQ Q+GW DQRLPGYLRQHAQESA
Sbjct: 119 QPVQQGLSVPQAQGPAVLAGYSESSEQPTGPMANGVLQNQAGW-DQRLPGYLRQHAQESA 177

Query: 177 LKGTESALPYARAASLENR 195
           LKGTE+ALPYARAASLENR
Sbjct: 178 LKGTETALPYARAASLENR 196