Pairwise Alignments

Query, 193 a.a., RNA polymerase sigma-H factor from Pseudomonas simiae WCS417

Subject, 191 a.a., RNA polymerase, sigma 24 (sigma E) factor (NCBI) from Escherichia coli BW25113

 Score =  247 bits (630), Expect = 1e-70
 Identities = 121/191 (63%), Positives = 154/191 (80%), Gaps = 1/191 (0%)

Query: 1   MLTQEEDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYR 60
           M  Q  DQ LVERVQ+GD++AF+LLV++YQHK+  L+ R+V  + +  DV QEAFIKAYR
Sbjct: 1   MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYR 59

Query: 61  ALGNFRGDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPE 120
           AL +FRGDSAFYTWLYRIA+NTAKNYLV++GRRPP SDV + +AE ++    LK++ +PE
Sbjct: 60  ALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPE 119

Query: 121 RALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRARE 180
             +L +E+   V RTI+ LPEDLR A+TLRE DGLSYE+IA++M CPVGTVRSRIFRARE
Sbjct: 120 NLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 179

Query: 181 AIDKALQPLLQ 191
           AID  +QPL++
Sbjct: 180 AIDNKVQPLIR 190