Pairwise Alignments

Query, 430 a.a., porin from Pseudomonas simiae WCS417

Subject, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  243 bits (619), Expect = 1e-68
 Identities = 144/416 (34%), Positives = 220/416 (52%), Gaps = 25/416 (6%)

Query: 23  ASAATLAGFSPLSQAAFFEDSSATLETRNMYFNRDFRDGTSAQQSKRDEWAQGFMLNLQS 82
           A  ATLA +  LS A   E    +L +RN + + DFR  + + Q+ R EWAQGF+  ++S
Sbjct: 11  ALLATLALWPALSHA---EAPGWSLLSRNYFLHSDFRSPSGSGQNYRQEWAQGFIGEVRS 67

Query: 83  GYTDGTVGFGVDALGMLGVKLDSSPDRTGTGLLPTHDDGRAADEYSKLGLTGKVKISATE 142
           G+T+GTVG G+DA G LG+KLD     +GTGLLP   DGRA  EYS  G   K+++  T+
Sbjct: 68  GFTEGTVGVGIDAHGFLGLKLDGGRGHSGTGLLPRDSDGRAESEYSSAGAALKMQLGNTQ 127

Query: 143 LKIGSLIPELPILKPNDGRILPQTFNGGLITSKEFKNLVFTGGRLDKAKDRDDTNYEDIA 202
           L+ G ++ E P+    D R+ P+   G  + + +  +     GR     ++D+++  D  
Sbjct: 128 LRYGEMMVETPVFDTGDKRLHPEYATGWWVENTDQPDWRLQAGRFTAFNNQDNSSTHD-- 185

Query: 203 LNNKNSRFVSGATGKHFNFGGADYQFADKITGSYHFAQLDDVYRQHFLGLVASRPMGPGT 262
                S + +    +  +  GA +        + +  QL++ +RQ +L L     +  G 
Sbjct: 186 ---DFSGYGATTHNRAISLAGATFAPNGPFGAALYAGQLENTWRQAYLNL----NLAQGN 238

Query: 263 FGTDLRLAISDDTGAARGGKIDNTSLNGLFSYALNGHKLSAGYQHMSGDSAFPYVDGSDP 322
           +  D  L  + DTG A  G ID  + + L  Y+     LS  YQ + GD+ F +V G   
Sbjct: 239 WRLDGNLYKTRDTGNASAGAIDTLAYSLLAKYSFGAQALSVAYQKVEGDTPFDFVGGDSI 298

Query: 323 YLVNFVQINDFAGAEERSWQARYDFDFAKLGIPGLSFMSRYLSGDNIKLKN--------- 373
           YL N ++  DF G  E SWQ RYD +FA LG PGLS M RY+SG  I   +         
Sbjct: 299 YLANAIKYADFNGPGEHSWQLRYDLNFATLGAPGLSLMGRYVSGRGIDGSHAPAGGAYVN 358

Query: 374 --GETGKEWERNSEIKYVVQTGTFKDVAVRLRNATYRSN--YSARDADEMRLLVSY 425
             G+ GK WER+ ++KYVVQ+G  KD+++   + ++R+N   +  D D + L++ Y
Sbjct: 359 QYGDGGKHWERDIDLKYVVQSGAAKDLSLSFSHVSHRANQAQAGDDIDRIYLIIEY 414