Pairwise Alignments

Query, 430 a.a., porin from Pseudomonas simiae WCS417

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  476 bits (1224), Expect = e-139
 Identities = 229/402 (56%), Positives = 304/402 (75%), Gaps = 8/402 (1%)

Query: 37  AAFFEDSSATLETRNMYFNRDFRDGTSAQQ---SKRDEWAQGFMLNLQSGYTDGTVGFGV 93
           A F ED+SA +E RN+YFNRDFRDG S+     SKR+EWAQGF+LN+QSGYT G VG GV
Sbjct: 32  AGFLEDASAKIEARNVYFNRDFRDGYSSSSQGASKREEWAQGFILNVQSGYTQGPVGVGV 91

Query: 94  DALGMLGVKLDSSPDRTGTGLLPT--HDDGRAADEYSKLGLTGKVKISATELKIGSLIPE 151
           DALGM G KLDSSP  + +GLLP+  HD  R+AD+Y+K+GL  KVK+S T LK GS++P+
Sbjct: 92  DALGMFGFKLDSSPADSNSGLLPSSGHDPRRSADQYAKMGLAAKVKVSNTVLKYGSMMPD 151

Query: 152 LPILKPNDGRILPQTFNGGLITSKEFKNLVFTGGRLDKAKDRDDTNYEDIALNNKNSRFV 211
           +P+LK NDGR+LP  F+G ++TS+E  +L FT  RLDK   RD T+ +DI ++ KN R+ 
Sbjct: 152 VPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYTARDSTDRQDIRVHCKNKRYA 211

Query: 212 SGATGKHFNFGGADYQFADKITGSYHFAQLDDVYRQHFLGLVASRPMGPGTFGTDLRLAI 271
                 HF+  G DY+F ++ +  Y  A+L+++YRQHFLGLVAS+P+  G+   D+RL  
Sbjct: 212 CDTEADHFDLAGVDYRFNERFSAQYQVAKLENIYRQHFLGLVASQPLPVGSLSADMRLIK 271

Query: 272 SDDTGAARGGKIDNTSLNGLFSYALNGHKLSAGYQHMSGDSAFPYVDGSDPYLVNFVQIN 331
           SDD G AR G+ID+ + +G+  Y+L GHKLSAG+Q M G+SA PY+DGS+PYLVN+ Q+N
Sbjct: 272 SDDIGNARAGEIDHRAFSGMLGYSLGGHKLSAGWQRMYGNSAMPYLDGSNPYLVNYAQVN 331

Query: 332 DFAGAEERSWQARYDFDFAKLGIPGLSFMSRYLSGDNIKLKNGET-GKEWERNSEIKYVV 390
           DFA A+ERSWQ RYD+DF  LG+PGL+F +RY++GDNIK+      GKEWER++E KY V
Sbjct: 332 DFAAAQERSWQVRYDYDFKALGVPGLTFFTRYINGDNIKVPGSSVEGKEWERDTEFKYQV 391

Query: 391 QTGTFKDVAVRLRNATYRSNYS--ARDADEMRLLVSYSVALW 430
           Q+GTFKDV+VRLRN+TYRSNY   ARD DE R++VSY+ +++
Sbjct: 392 QSGTFKDVSVRLRNSTYRSNYERWARDMDETRVIVSYNFSIF 433