Pairwise Alignments

Query, 430 a.a., porin from Pseudomonas simiae WCS417

Subject, 449 a.a., putative OprD family outer membrane porin from Pseudomonas putida KT2440

 Score =  247 bits (631), Expect = 5e-70
 Identities = 154/439 (35%), Positives = 231/439 (52%), Gaps = 35/439 (7%)

Query: 19  QTALASAATLAG--FSPLSQAAFFEDSSATLETRNMYFNRDFRDG-------TSAQQSKR 69
           +TAL+ A  LA   F+      F + +   +  RN +F++D+R+G          +QS  
Sbjct: 8   RTALSLAILLASPAFADSDDEGFIDGTRVHVLNRNFFFSQDYRNGDFTLNPNNGERQSLH 67

Query: 70  DEWAQGFMLNLQSGYTDGTVGFGVDALGMLGVKLDSSPDRTGTGL-LP-------THDDG 121
            EW  G + NLQSG+T GTVGFGVD  G++G+KLD      G G+ +P       ++ DG
Sbjct: 68  REWGHGIIANLQSGFTRGTVGFGVDVQGLVGLKLDGGNGAVGNGVGVPGIVSRSGSNFDG 127

Query: 122 RAADEYSKLGLTGKVKISATELKIGSLIPELPILKPNDGRILPQTFNGGLITSKEFKNLV 181
              D Y K+G   KV+   TEL+ G + P  P+L  +D R+LPQT  G +  +     L 
Sbjct: 128 EPKDSYGKVGTALKVRAFDTELRYGDVSPTSPVLHASDIRLLPQTLRGFIFNNNSLDGLS 187

Query: 182 FTGGRLDKAKDRDDTNYEDIALNNKNSRFVSGATGKHFNFGGADYQFADKITGSYHFAQL 241
             GG+L+ + DR+ +N+    L    +  + GA      + G DY+F D++T   H ++L
Sbjct: 188 LQGGKLESSSDRNASNHRG-DLGTVYAGRIKGA--NDVVYLGGDYRFNDQLTLRLHSSRL 244

Query: 242 DDVYRQHFLGLVASRPMGPG-TFGTDLRLAISDDTGAARGGKIDNTSLNGLFSYALNGHK 300
           DDV+ Q F  +   +P+G   +  T L    + D+G A  G+IDN S +     A   H 
Sbjct: 245 DDVWNQSFFSVDHVQPLGSELSLKTGLNYYRTRDSGQALAGQIDNDSWSVHAGLAAGAHG 304

Query: 301 LSAGYQHMSGDSAFPYV-DGSDPYLVNFVQINDFAGAEERSWQARYDFDFAKLGIPGLSF 359
               Y  + GD+ F YV +  D  L    Q++DF    ER+W+ARYD+DFA LG+PGLS 
Sbjct: 305 FKLSYTRIDGDTPFDYVWNTYDLQLDAASQVSDFNNPNERAWEARYDYDFAPLGVPGLSL 364

Query: 360 MSRYLSGDNIK----------LKNGETGKEWERNSEIKYVVQTGTFKDVAVRLRNATYR- 408
            +RY+ G +I               E G+ WERN  +KYV+Q+G  KD++  L  AT+R 
Sbjct: 365 TARYVRGTDIDGTRAGGAYSYFNGTEDGRHWERNLWLKYVLQSGPAKDLSFNLMQATHRV 424

Query: 409 --SNYSARDADEMRLLVSY 425
              + +  + DE+RL+V Y
Sbjct: 425 GGDHVAESNVDELRLIVQY 443