Pairwise Alignments

Query, 430 a.a., porin from Pseudomonas simiae WCS417

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  285 bits (730), Expect = 1e-81
 Identities = 162/433 (37%), Positives = 246/433 (56%), Gaps = 33/433 (7%)

Query: 16  RLTQTALASAATLAGFSPLSQAA-------FFEDSSATLETRNMYFNRDFRDGTSAQQSK 68
           R+ + ++ + A  AG S L+ A+       F EDS  +++TR +YF+RDFR+    Q S+
Sbjct: 2   RVMKWSMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQ-SR 60

Query: 69  RDEWAQGFMLNLQSGYTDGTVGFGVDALGMLGVKLDSSPDRTGTGLLPTHDDGRAADEYS 128
           R+E   GF+   +SG+T GTVG GVDA+GMLG+KLDS   R GTGL PT  DGR+ D+YS
Sbjct: 61  REETGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLFPTGSDGRSQDDYS 120

Query: 129 KLGLTGKVKISATELKIGSLIPELPILKPNDGRILPQTFNGGLITSKEFKNLVFTGGRLD 188
           K G   K +IS T LK+G     LP+   +D R+LP+   G LITS E + L    G   
Sbjct: 121 KGGGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFT 180

Query: 189 KAKDRDDTNYEDIALNNKNSRFVSGATGKHFNFGGADYQFADKITGSYHFAQLDDVYRQH 248
               ++ TN +   L             K  N  G  Y F D ++ S ++++++D +R++
Sbjct: 181 SLTAQEQTNRDSFGL-------------KEANVVGGTYAFTDNLSTSLYYSKVEDYWRKY 227

Query: 249 FLGLVASRPMGPGT-FGTDLRLAISDDTGAAR-----GGKIDNTSLNGLFSYALNGHKLS 302
           +  +  + P+        D  +  +   G+A      G K+DN + +   +Y +  H  +
Sbjct: 228 YANVNWALPISDNQGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFT 287

Query: 303 AGYQHMSGDSAFPY-VDGSDP-YLVNFVQINDFAGAEERSWQARYDFDFAKLGIPGLSFM 360
             YQ ++GD  + Y +DG    +L N V  +DF   +E+SWQARYD +FA+ GIPGL+FM
Sbjct: 288 LAYQKVTGDGDYGYGIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFM 347

Query: 361 SRYLSGDNIKLKNGETGKEWERNSEIKYVVQTGTFKDVAVRLRNATYRSN----YSARDA 416
           +RY+ G +  +     GKEWER+ +IKYV+Q G  KD++ R+R ATYRS+    Y +   
Sbjct: 348 TRYVRGSDANVAGTSNGKEWERDVDIKYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSI 407

Query: 417 DEMRLLVSYSVAL 429
           DE+RL+V Y +++
Sbjct: 408 DELRLIVEYPLSI 420