Pairwise Alignments

Query, 387 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 417 a.a., predicted transporter (NCBI) from Escherichia coli BW25113

 Score =  165 bits (417), Expect = 2e-45
 Identities = 110/377 (29%), Positives = 177/377 (46%), Gaps = 9/377 (2%)

Query: 3   PRLHCARLALFLCGCAAFLNLYATQSILQTFATQFHISAKMAGWSITVTTLAVAITAPFV 62
           P+     LALF  G A F  LY  Q IL   + +F ++   +  S++++T  +AI   F 
Sbjct: 32  PQFMRVTLALFSAGLATFALLYCVQPILPVLSQEFGLTPANSSISLSISTAMLAIGLLFT 91

Query: 63  SRLTGRFELRTVISVAALLLAVPALMTAYADSFAEVLVWRFVEGMLIPVVFATSVAYIGD 122
             L+     + V+  A LL ++  L++    S+  +L+ R + G+ +  V A  + Y+ +
Sbjct: 92  GPLSDAIGRKPVMVTALLLASICTLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSE 151

Query: 123 RWRGGTVTEVTSLYVAGTVLGGFAGRFVTGVMTEYAGWREAFELLAVLSLTVGGFIQFLL 182
                 V     LY++G  +GG +GR ++GV T++  WR A   +   +L        +L
Sbjct: 152 EIHPSFVAFSMGLYISGNSIGGMSGRLISGVFTDFFNWRIALAAIGCFALASALMFWKIL 211

Query: 183 PAS-HGRP--LRGETAFSAVFR-----KPLLAAYAVGFCVLFSQVAAFTYAGLYLGLPPF 234
           P S H RP  LR +T F   FR     + L   +A GF ++ S V  F Y G  L L P+
Sbjct: 212 PESRHFRPTSLRPKTLFIN-FRLHWRDRGLPLLFAEGFLLMGSFVTLFNYIGYRLMLSPW 270

Query: 235 GLGPAALGTLYTVFLLALIVIPVAGRLSKSRPHAELLSVAAGLGISGSALTLVPSLWCIV 294
            +  A +G L   +L      P AG ++       ++  + G+ + G  +TL  SLW I 
Sbjct: 271 HVSQAVVGLLSLAYLTGTWSSPKAGTMTTRYGRGPVMLFSTGVMLFGLLMTLFSSLWLIF 330

Query: 295 VGLALSSTGVFLAQAAANAFTAATAGDNKAGAVGMYLTCYYLGGSCGAIVPALIWERWGW 354
            G+ L S G F A + A+++    A   K  A  +YL  YYLG S    +  + W  +GW
Sbjct: 331 AGMLLFSAGFFAAHSVASSWIGPRAKRAKGQASSLYLFSYYLGSSIAGTLGGVFWHNYGW 390

Query: 355 AGCVTLIIAFQILTLLI 371
            G    I    ++ LL+
Sbjct: 391 NGVGAFIALMLVIALLV 407