Pairwise Alignments

Query, 179 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 160 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  102 bits (254), Expect = 3e-27
 Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 3/154 (1%)

Query: 17  FYTDILYFLRKRTDNASDAADMTQDVFTQWLDYRDRAKVEQPRAFLFQMARNLLRDHWRK 76
           +Y +++ FL  +  N   A D+  D + + L+      +EQPRAFL++ A NL+ D  R+
Sbjct: 5   YYRELVCFLNAKLGNRQVAEDVVHDAYVRVLERSSDTPIEQPRAFLYRTALNLVIDGHRR 64

Query: 77  QKVRHTVHSDQADMDAEPATDEQNDPMAAVQRLQRLEQLKEVLAELSPRRREALMLHRFE 136
             +R     D  D +   A+   + P       QRLE L+  LAEL P  R++ +L + E
Sbjct: 65  NALRQVEPLDVLDAEERFAS---SSPHTHHDHGQRLELLERALAELPPACRDSFLLRKLE 121

Query: 137 GLSQAQIAERMGISTSMVEKHIAFALLHCKRRLQ 170
           GL+  QIAER+ IS +MVEKHI  A+ HC+ R++
Sbjct: 122 GLTHLQIAERLSISRAMVEKHIVNAMKHCRVRMR 155