Pairwise Alignments

Query, 179 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  103 bits (256), Expect = 2e-27
 Identities = 60/155 (38%), Positives = 92/155 (59%), Gaps = 5/155 (3%)

Query: 17  FYTDILYFLRKRTDNASDAADMTQDVFTQWLDYRDRAKVEQPRAFLFQMARNLLRDHWRK 76
           +Y +++ FL  R  +   A D+  D + + L+     ++E PRAFL++ A NL+ D  R+
Sbjct: 4   YYRELVSFLSARLGSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVDRHRR 63

Query: 77  QKVRHTVHSDQADMDAEPATDE-QNDPMAAVQRLQRLEQLKEVLAELSPRRREALMLHRF 135
           Q VR     D  D D+   + E Q+D    +Q  QRL  +++ L ELS   R++ +L + 
Sbjct: 64  QLVRQAEPLDALDADSRLHSSELQHD----LQLDQRLALMQKALDELSRPCRDSFLLRKI 119

Query: 136 EGLSQAQIAERMGISTSMVEKHIAFALLHCKRRLQ 170
           EGLS  QIAER+GIS S+VEKHI  A+ HC+ R++
Sbjct: 120 EGLSHQQIAERLGISRSLVEKHIVNAMKHCRVRMR 154