Pairwise Alignments

Query, 179 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 97.8 bits (242), Expect = 2e-25
 Identities = 62/171 (36%), Positives = 102/171 (59%), Gaps = 5/171 (2%)

Query: 1   MSRPKPDLLSADAFRGFYTDILYFLRKRTDNASDAADMTQDVFTQWLDYRDRA-KVEQPR 59
           ++ P   LL++  F+  Y D+L FL +R  +   AAD+ Q+ + + ++  ++A  V   R
Sbjct: 2   LTSPMSGLLAS--FQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHAR 59

Query: 60  AFLFQMARNLLRDHWRKQKVRHTVHSDQADMDAEPATDEQNDPMAAVQRLQRLEQLKEVL 119
           +F+F++A NL  D  R+++ R     D +D   E A      P AA+   +RL+ L + L
Sbjct: 60  SFIFRVAGNLAIDALRREQ-RIAASHDDSDGACEVACPAPA-PEAALLARERLQILDQAL 117

Query: 120 AELSPRRREALMLHRFEGLSQAQIAERMGISTSMVEKHIAFALLHCKRRLQ 170
            +L    R+AL+L+R EGL+Q Q+A+R+G+S SMV K+I  AL HC+ RL+
Sbjct: 118 LQLPDNARQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRLK 168