Pairwise Alignments

Query, 179 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 89.0 bits (219), Expect = 4e-23
 Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 5/156 (3%)

Query: 14  FRGFYTDILYFLRKRTDNASDAADMTQDVFTQWLDYRDRAKVEQPRAFLFQMARNLLRDH 73
           F   Y +++    ++  +   A D+T D F + L+   R +VEQPRA+L Q ARN+  D 
Sbjct: 7   FLDHYHELIGTWTRKLRSRQQAEDLTHDAFVRVLE-TPREQVEQPRAYLHQAARNIAVDG 65

Query: 74  WRKQKVRHTVHSDQADMDAEPATDEQNDPMAAVQRLQRLEQLKEVLAELSPRRREALMLH 133
           +R++  R  +  +  +   E AT    DP A V  L+  + ++  LAEL    R+  +  
Sbjct: 66  FRREDRRQALEREAFE---EGATGS-GDPEAYVHALELADSVERALAELPLNCRQVFIWQ 121

Query: 134 RFEGLSQAQIAERMGISTSMVEKHIAFALLHCKRRL 169
           + EGL+QA+IAERMG+S +MVEK++   L H +  L
Sbjct: 122 KLEGLTQAEIAERMGLSKNMVEKYMIRTLRHLREHL 157