Pairwise Alignments

Query, 179 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 86.3 bits (212), Expect = 3e-22
 Identities = 49/154 (31%), Positives = 87/154 (56%), Gaps = 4/154 (2%)

Query: 14  FRGFYTDILYFLRKRTDNASDAADMTQDVFTQWLDYRDRAKVEQPRAFLFQMARNLLRDH 73
           ++  +T +  +LR R   +  AAD+ QD F + L  R  + +++PRA+L  +AR L+ D 
Sbjct: 16  YQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEPRAYLSSIARGLMIDQ 75

Query: 74  WRKQKVRHTVHSDQADMDAEPATDEQNDPMAAVQRLQRLEQLKEVLAELSPRRREALMLH 133
           +R++ +        A +  E     + D +  +  L+RL++    L +L PR R+A +L 
Sbjct: 76  FRRRALERAYQEGLAHLP-EAEVPSEEDKLVILDSLERLDR---ALQQLKPRVRQAFLLA 131

Query: 134 RFEGLSQAQIAERMGISTSMVEKHIAFALLHCKR 167
           + +GLS  Q+A+R+G+S + VE+ +A AL  C R
Sbjct: 132 QLDGLSIVQVAQRLGVSRATVERDLAKALGACYR 165