Pairwise Alignments

Query, 817 a.a., TonB-dependent receptor from Pseudomonas simiae WCS417

Subject, 833 a.a., ligand-gated channel from Pseudomonas simiae WCS417

 Score =  610 bits (1572), Expect = e-178
 Identities = 352/850 (41%), Positives = 497/850 (58%), Gaps = 60/850 (7%)

Query: 5   PIQPLARALRRGLFVSLLATVPMVPTLGYAEESAEAQRSYNIPAGNLDQALNRFASASGI 64
           P+ PLA ++        L TV       +AEES+ A   ++IPAG+L QALN  A  +G+
Sbjct: 7   PLHPLALSVAMAFAAVPLLTVQST----HAEESSSAVGRFSIPAGDLSQALNSLAEQAGL 62

Query: 65  LLSVDATLTEGKRSAGLQGRYGVESGLERLLMGSGLMAMQ-SQGGWSLQAV-SNGGPLQL 122
           +L+ DA+LT GKRS GL G+Y  +  L +LL GSGL A++ S   + L+++  NGG ++L
Sbjct: 63  VLAFDASLTRGKRSQGLSGQYDTDVALTQLLSGSGLQALKLSADRYRLESIPDNGGAMEL 122

Query: 123 GATQISGQQTQESAWGPVDGIVATRSASGSKTDSSLVEIPQTINVITAAEIKARGAQSVT 182
            AT ISG    ES  GPV G VATRS SG+KTD++L+E PQ+I+++T  +++A+ A+S+ 
Sbjct: 123 QATTISGAYQAESPTGPVSGYVATRSLSGTKTDTALIETPQSISIVTKDQMRAQNAESLN 182

Query: 183 QALLYTPGM---TAGGFADRVKLFDEPTSRGFSPTPLYLDGLHLPYGGGSTGGALQIEPY 239
           Q L Y+  +   T G  A R+   D+ T RGFSP   YLDGL +P    S     Q + +
Sbjct: 183 QILRYSAAVIPETRGATASRL---DQLTIRGFSPAT-YLDGLRMP---SSRDALPQKDAF 235

Query: 240 SLERIEVLKGPASVLYGQNQPGGIVNMVSKRPSETAIHQVVLEAGTYEHKGAAIDLSGPL 299
            LER+EVL+GPASVLYGQ  P G++NMVSKRP +T  H+V +E GT+  K    DLSGP+
Sbjct: 236 DLERVEVLRGPASVLYGQGTPSGVINMVSKRPLDTPFHEVGVEYGTFNKKRTTFDLSGPM 295

Query: 300 DEQGQFLYRLTGLANDGQDEINYVENKRQFIAPSLTWRPSDETSVTVFAQYQKDKGVPEA 359
           D+QG + YR+ GL +D   ++ + E +RQ ++ + TWRP D TS+T+   +QKD      
Sbjct: 296 DDQGVYSYRVAGLFDDADGQVEHTETRRQSLSSAFTWRPDDATSLTLLGHFQKDPKGASY 355

Query: 360 QGLPASGTLWDNPNGK-IKRDVFIGEPGVNQYNREQYALGYEISHRLNDTWTLKQNARYA 418
             +PA G++  +P G+ I  D + GE    + +RE Y++G+   H  +D WT++QNARY 
Sbjct: 356 GSVPAWGSVLHSPTGRSIDVDFYDGEKNFEKSDREYYSIGWAFEHHFDDVWTVRQNARYL 415

Query: 419 EVDDRYTAPLHGYRFVANPVSGVQDQRYLQRFGVDWAQNNKVFGVDSIAQAEFDTGALSH 478
             + +Y +    Y         + D R ++R  +    +   + +D+  QA+FDTG L H
Sbjct: 416 RSEGQYRSLYSNYL--------MADYRTIRRSTIASDVDLDAYTLDNQVQAKFDTGPLQH 467

Query: 479 TMIFGLDYYHSNS---LFHGLYDRNPPIIDLFKPVYGQRLNFGQPYRWDRT--ITQTGLY 533
           T++ GLDY ++++      G+Y    P +D+F PVYG  +     Y  D T    QTG+Y
Sbjct: 468 TLLMGLDYQNTSTDTLSGSGVYTAG-PTLDIFNPVYGAAVPV-PAYTTDGTSRSEQTGVY 525

Query: 534 MQDQIKLDKWALVLGGRYDWANVVNKEPLTDTRFASK----DQAFTGRAGLVYLFDNGVA 589
           +Q+Q+K DKW L+LGGRYDWA+  N      +   SK     +AFTGR GLVYLFDNG+A
Sbjct: 526 LQEQMKWDKWVLLLGGRYDWASTDNSTQTLSSGAKSKSSLDSKAFTGRIGLVYLFDNGLA 585

Query: 590 PFVSYTESFLPLAGTDANQKPFKPSTGNQYEVGVKYQPPGQKSFVQVSVYQLDQENVLTT 649
           P+ SY ESF P +GT      FKP+ G QYE+G+KYQPPG  SF+  +++ L Q NVLTT
Sbjct: 586 PYASYAESFNPQSGTGYGGSVFKPTEGKQYEIGIKYQPPGSNSFITAAIFDLRQTNVLTT 645

Query: 650 NPVDTTF------STQSGAMRSRGVELEAKAVLSDAWDIVA---------SASRNDIKYT 694
           +P  T         +Q G ++SRG ELE KA L+D  DI A         S S N ++Y 
Sbjct: 646 DPDPTHLCGTGRCQSQDGEVQSRGFELEGKASLNDNLDITAAYAYLDNRISKSNNTVRYA 705

Query: 695 KDND-------GREGRHPAGISPLTASMWVNYSVLGDTPLAGLGAGLGVRYARQSLGDYY 747
             +D         EG    G+   TAS W +Y+V  D  L G G G G RY   S GD  
Sbjct: 706 PISDIGVGPAIAAEGTTTYGVPRHTASAWADYTV-HDGKLKGFGVGAGARYVGSSWGD-T 763

Query: 748 EGAFSVPSYSVYDASLSYDLSRSPLKLKGVKLAMNVQNLTNKTYVSQCTSNLDCYYGEGR 807
                VP Y+++DA++ YD+         ++LA+N  NL NK YV+ C S   C+YG  R
Sbjct: 764 ANTLKVPGYTLFDAAVHYDIPNIARLKDNLRLALNATNLANKEYVASCYSYSWCWYGSQR 823

Query: 808 TVVSSLTYDW 817
           TV +S TY W
Sbjct: 824 TVQASATYQW 833