Pairwise Alignments

Query, 388 a.a., arabinose transporter permease from Pseudomonas simiae WCS417

Subject, 387 a.a., Inner membrane transport protein YdhP from Sphingobium sp. HT1-2

 Score =  350 bits (899), Expect = e-101
 Identities = 180/372 (48%), Positives = 248/372 (66%)

Query: 5   LLILALSAFAIGTTEFVIMGLLPDVAADLGVSIPGAGWLVTGYALGVAIGAPFMALATAK 64
           LL LA  AF IG TEF  MGLLP +A DLGVSIP AG L++ YA+GV +GAP M L T +
Sbjct: 7   LLALAAGAFGIGVTEFAPMGLLPVIATDLGVSIPAAGLLISAYAIGVMLGAPLMTLTTGR 66

Query: 65  LPRKAALVALMGIFIIGNLLCALASDYNVLMFARVVTALCHGAFFGIGSVVAANLVPANK 124
           LPR+  L+ L  IF +GNL+ AL++ Y +L+FAR++T+L HGAFFG+GS+VAA+LVP  +
Sbjct: 67  LPRRTLLIGLAAIFTVGNLIAALSTSYAMLLFARIITSLNHGAFFGVGSIVAASLVPPQR 126

Query: 125 RASAVALMFTGLTLANVLGVPLGTALGQEAGWRSTFWAVTVIGVVALIGLIRFLPAKRDE 184
           +A AVA MF GLT+ANV+GVPL T  G+  GWR+ FW +  +GV+ +  L   LP     
Sbjct: 127 QAGAVAAMFMGLTIANVVGVPLATWAGEVMGWRAAFWGIAALGVLTIAALRLTLPDMPAP 186

Query: 185 EKLDMRAELAALKGAGIWLSLSMTALFAASMFTLFTYVAPLLGDVTGVSPKGVTWTLLLI 244
            + D R+EL  L    +  +L +T + A++MFT+FTY+ P+L D T  S   VT  L+L 
Sbjct: 187 TEGDARSELRVLMRGPVLAALGLTVVGASAMFTVFTYITPILRDQTHGSIGFVTAMLVLY 246

Query: 245 GLGLTVGNIIGGKLADKRLAATLIGVFISMAVVSTALTWTSVAVIPTEITLFLWATASFA 304
           G+GLT+GN +GG+ AD+ +  TLI    ++  +  A  +      PT + +FLW  ASFA
Sbjct: 247 GVGLTIGNWLGGRFADRSVDRTLIVTLAALTAILIAFAFAMPFAGPTAVLIFLWGIASFA 306

Query: 305 AVPALQINVVTFGKAAPNLVSTLNIGAFNIGNALGAWVGGSVIAHGFGLTRVPLAAAVLA 364
            VP LQ+ V++    APNL S++NIGAFN+GNA+GA +GG+VIA G  L  V +A AV +
Sbjct: 307 LVPPLQVRVMSAAADAPNLASSMNIGAFNLGNAIGAALGGAVIAAGLSLPFVAIAGAVAS 366

Query: 365 ILALLVTLITFR 376
            L L+  L++ R
Sbjct: 367 SLGLIALLLSRR 378