Pairwise Alignments

Query, 169 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

 Score =  146 bits (368), Expect = 2e-40
 Identities = 75/163 (46%), Positives = 109/163 (66%), Gaps = 1/163 (0%)

Query: 1   MDTATDGQQQLHLLYRDHHGWLQGWLRRRLGDREHAADVAQDTFLRLLVSGRFPGD-KES 59
           +D A   +  L  LYR+H GWL+ WLRRR+G+   AAD++QDTFLR+L S +   D +E 
Sbjct: 2   IDAAPPPEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREP 61

Query: 60  RSYLAQIARNLVIDQWRRLRIERAYLESIAHLPEPESPSLETRALILETLMQIDAMLDRM 119
           R+YL  + + L+ +  +R  +E+AYL+++A LPE   PS E R ++LETL  +D +LD +
Sbjct: 62  RAYLLTVGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGL 121

Query: 120 PDNVRQAFLLSQFEGLSYAQIAERLGVTVSSVQKYMTRAIVAC 162
              +R+AFL SQ EGL YA+I +RLGV   SV++YM +A   C
Sbjct: 122 KPAIRKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHC 164