Pairwise Alignments

Query, 169 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

 Score =  174 bits (440), Expect = 9e-49
 Identities = 90/157 (57%), Positives = 115/157 (73%), Gaps = 1/157 (0%)

Query: 10  QLHLLYRDHHGWLQGWLRRRLGDREHAADVAQDTFLRLLVSGRFPG-DKESRSYLAQIAR 68
           Q+  LY +HHGWLQGWL R+LG+   AAD+A DTF+RLL     P    E R+ L  IA+
Sbjct: 11  QVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNEPRALLTHIAK 70

Query: 69  NLVIDQWRRLRIERAYLESIAHLPEPESPSLETRALILETLMQIDAMLDRMPDNVRQAFL 128
            LV+D+WRR  +ERAYLE+IAHLP+PE PS ETR LILETL +IDAML  MP  VRQ FL
Sbjct: 71  GLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMPARVRQVFL 130

Query: 129 LSQFEGLSYAQIAERLGVTVSSVQKYMTRAIVACYQV 165
           LSQ +GL+YAQIAE+L V++ ++++ M  A +AC  +
Sbjct: 131 LSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLACLSI 167