Pairwise Alignments

Query, 416 a.a., porin from Pseudomonas simiae WCS417

Subject, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  223 bits (567), Expect = 1e-62
 Identities = 152/427 (35%), Positives = 223/427 (52%), Gaps = 29/427 (6%)

Query: 2   STFHPRRLLLATAVASLALPVVAEEHGFLEDASANLNLRNFFFNRNYTNPT-KAQGGAQE 60
           +T  P R LLAT     AL   AE  G+      +L  RN+F + ++ +P+   Q   QE
Sbjct: 4   ATHGPGRALLATLALWPALSH-AEAPGW------SLLSRNYFLHSDFRSPSGSGQNYRQE 56

Query: 61  WTQSFILDAKSGFTQGTVGFGVDVLGLYSLKLDGGRGTGGTQLLPLDHDGRPADEFGRLG 120
           W Q FI + +SGFT+GTVG G+D  G   LKLDGGRG  GT LLP D DGR   E+   G
Sbjct: 57  WAQGFIGEVRSGFTEGTVGVGIDAHGFLGLKLDGGRGHSGTGLLPRDSDGRAESEYSSAG 116

Query: 121 VAFKARISKTEVKVGEWMPVLPILRSDDGRSLPQTLRGGQITSKEIDGLTLYGGQFRANS 180
            A K ++  T+++ GE M   P+  + D R  P+   G  + + +     L  G+F A +
Sbjct: 117 AALKMQLGNTQLRYGEMMVETPVFDTGDKRLHPEYATGWWVENTDQPDWRLQAGRFTAFN 176

Query: 181 PRDDSSMNDLSMFGKTAFTSDR-FNFQGAEYAFNDKRTQIGLWNAQLKDIYSQQFINLIH 239
            +D+SS +D    G  A T +R  +  GA +A N       L+  QL++ + Q ++NL  
Sbjct: 177 NQDNSSTHD-DFSGYGATTHNRAISLAGATFAPNGP-FGAALYAGQLENTWRQAYLNLNL 234

Query: 240 SQPLGNWTLGANLGFFYGKDDGSARAGELDNKTWSGLFSAKYGGNTFYLGLQKLTGNSAW 299
           +Q  GNW L  NL  +  +D G+A AG +D   +S L    +G     +  QK+ G++ +
Sbjct: 235 AQ--GNWRLDGNL--YKTRDTGNASAGAIDTLAYSLLAKYSFGAQALSVAYQKVEGDTPF 290

Query: 300 MRVNGTSGGTLANDSYNASYDNAQEKSWQVRHDYNFAALGVPGLTLMNRYISGSNVHTGT 359
             V G S   LAN    A ++   E SWQ+R+D NFA LG PGL+LM RY+SG  +    
Sbjct: 291 DFVGGDS-IYLANAIKYADFNGPGEHSWQLRYDLNFATLGAPGLSLMGRYVSGRGIDGSH 349

Query: 360 V-----------TDGKEWGRESELGYTVQSGSLKNLTVRLRNSSMRRD--YSNNEFDENR 406
                         GK W R+ +L Y VQSG+ K+L++   + S R +   + ++ D   
Sbjct: 350 APAGGAYVNQYGDGGKHWERDIDLKYVVQSGAAKDLSLSFSHVSHRANQAQAGDDIDRIY 409

Query: 407 LIVSYPI 413
           LI+ YP+
Sbjct: 410 LIIEYPL 416