Pairwise Alignments

Query, 416 a.a., porin from Pseudomonas simiae WCS417

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  293 bits (751), Expect = 5e-84
 Identities = 167/417 (40%), Positives = 246/417 (58%), Gaps = 16/417 (3%)

Query: 13  TAVASLALPVVAEEHGFLEDASANLNLRNFFFNRN----YTNPTKAQGGAQEWTQSFILD 68
           T +  L   V A+  GFLEDASA +  RN +FNR+    Y++ ++     +EW Q FIL+
Sbjct: 18  TGLFLLCAGVNAQAAGFLEDASAKIEARNVYFNRDFRDGYSSSSQGASKREEWAQGFILN 77

Query: 69  AKSGFTQGTVGFGVDVLGLYSLKLDGGRGTGGTQLLPLD-HDGR-PADEFGRLGVAFKAR 126
            +SG+TQG VG GVD LG++  KLD       + LLP   HD R  AD++ ++G+A K +
Sbjct: 78  VQSGYTQGPVGVGVDALGMFGFKLDSSPADSNSGLLPSSGHDPRRSADQYAKMGLAAKVK 137

Query: 127 ISKTEVKVGEWMPVLPILRSDDGRSLPQTLRGGQITSKEIDGLTLYGGQFRANSPRDDSS 186
           +S T +K G  MP +P+L+ +DGR LP    G  +TS+E+  L     +    + RD + 
Sbjct: 138 VSNTVLKYGSMMPDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYTARDSTD 197

Query: 187 MNDLSMFGKTA-----FTSDRFNFQGAEYAFNDKRTQIGLWNAQLKDIYSQQFINLIHSQ 241
             D+ +  K         +D F+  G +Y FN+ R       A+L++IY Q F+ L+ SQ
Sbjct: 198 RQDIRVHCKNKRYACDTEADHFDLAGVDYRFNE-RFSAQYQVAKLENIYRQHFLGLVASQ 256

Query: 242 PLGNWTLGANLGFFYGKDDGSARAGELDNKTWSGLFSAKYGGNTFYLGLQKLTGNSAWMR 301
           PL   +L A++      D G+ARAGE+D++ +SG+     GG+    G Q++ GNSA   
Sbjct: 257 PLPVGSLSADMRLIKSDDIGNARAGEIDHRAFSGMLGYSLGGHKLSAGWQRMYGNSAMPY 316

Query: 302 VNGTSGGTLANDSYNASYDNAQEKSWQVRHDYNFAALGVPGLTLMNRYISGSNVHT-GTV 360
           ++G S   L N +    +  AQE+SWQVR+DY+F ALGVPGLT   RYI+G N+   G+ 
Sbjct: 317 LDG-SNPYLVNYAQVNDFAAAQERSWQVRYDYDFKALGVPGLTFFTRYINGDNIKVPGSS 375

Query: 361 TDGKEWGRESELGYTVQSGSLKNLTVRLRNSSMRRDYSN--NEFDENRLIVSYPISL 415
            +GKEW R++E  Y VQSG+ K+++VRLRNS+ R +Y     + DE R+IVSY  S+
Sbjct: 376 VEGKEWERDTEFKYQVQSGTFKDVSVRLRNSTYRSNYERWARDMDETRVIVSYNFSI 432