Pairwise Alignments

Query, 416 a.a., porin from Pseudomonas simiae WCS417

Subject, 449 a.a., putative OprD family outer membrane porin from Pseudomonas putida KT2440

 Score =  243 bits (620), Expect = 8e-69
 Identities = 152/439 (34%), Positives = 242/439 (55%), Gaps = 34/439 (7%)

Query: 9   LLLATAVASLALPVVAEEHGFLEDASANLNLRNFFFNRNYTNPT--------KAQGGAQE 60
           L LA  +AS A    +++ GF++    ++  RNFFF+++Y N          + Q   +E
Sbjct: 11  LSLAILLASPAF-ADSDDEGFIDGTRVHVLNRNFFFSQDYRNGDFTLNPNNGERQSLHRE 69

Query: 61  WTQSFILDAKSGFTQGTVGFGVDVLGLYSLKLDGGRGTGGTQL-LP-------LDHDGRP 112
           W    I + +SGFT+GTVGFGVDV GL  LKLDGG G  G  + +P        + DG P
Sbjct: 70  WGHGIIANLQSGFTRGTVGFGVDVQGLVGLKLDGGNGAVGNGVGVPGIVSRSGSNFDGEP 129

Query: 113 ADEFGRLGVAFKARISKTEVKVGEWMPVLPILRSDDGRSLPQTLRGGQITSKEIDGLTLY 172
            D +G++G A K R   TE++ G+  P  P+L + D R LPQTLRG    +  +DGL+L 
Sbjct: 130 KDSYGKVGTALKVRAFDTELRYGDVSPTSPVLHASDIRLLPQTLRGFIFNNNSLDGLSLQ 189

Query: 173 GGQFRANSPRDDSS-MNDL-SMFGKTAFTSDRFNFQGAEYAFNDKRTQIGLWNAQLKDIY 230
           GG+  ++S R+ S+   DL +++      ++   + G +Y FND+ T + L +++L D++
Sbjct: 190 GGKLESSSDRNASNHRGDLGTVYAGRIKGANDVVYLGGDYRFNDQLT-LRLHSSRLDDVW 248

Query: 231 SQQFINLIHSQPLGN-WTLGANLGFFYGKDDGSARAGELDNKTWSGLFSAKYGGNTFYLG 289
           +Q F ++ H QPLG+  +L   L ++  +D G A AG++DN +WS       G + F L 
Sbjct: 249 NQSFFSVDHVQPLGSELSLKTGLNYYRTRDSGQALAGQIDNDSWSVHAGLAAGAHGFKLS 308

Query: 290 LQKLTGNSAWMRVNGTSGGTLANDSYNASYDNAQEKSWQVRHDYNFAALGVPGLTLMNRY 349
             ++ G++ +  V  T    L   S  + ++N  E++W+ R+DY+FA LGVPGL+L  RY
Sbjct: 309 YTRIDGDTPFDYVWNTYDLQLDAASQVSDFNNPNERAWEARYDYDFAPLGVPGLSLTARY 368

Query: 350 ISGSNV----------HTGTVTDGKEWGRESELGYTVQSGSLKNLTVRLRNSSMR---RD 396
           + G+++          +     DG+ W R   L Y +QSG  K+L+  L  ++ R     
Sbjct: 369 VRGTDIDGTRAGGAYSYFNGTEDGRHWERNLWLKYVLQSGPAKDLSFNLMQATHRVGGDH 428

Query: 397 YSNNEFDENRLIVSYPISL 415
            + +  DE RLIV YP+ +
Sbjct: 429 VAESNVDELRLIVQYPLDI 447