Pairwise Alignments

Query, 416 a.a., porin from Pseudomonas simiae WCS417

Subject, 429 a.a., tricarboxylate-specific outer membrane porin from Pseudomonas putida KT2440

 Score =  333 bits (853), Expect = 8e-96
 Identities = 192/424 (45%), Positives = 264/424 (62%), Gaps = 16/424 (3%)

Query: 4   FHPRRLLLA--TAVAS-LALPVVA--EEHGFLEDASANLNLRNFFFNRNYTNPTKAQGGA 58
           F P R  +A  +A+AS LAL  VA   +  F ED++A    RN +FNR++ + T AQ   
Sbjct: 9   FAPTRSFIARPSAIASALALAGVAPMSQAAFFEDSTATFETRNMYFNRDFRDGTSAQQSK 68

Query: 59  Q-EWTQSFILDAKSGFTQGTVGFGVDVLGLYSLKLDGGRGTGGTQLLPLDHDGRPADEFG 117
           + EW Q FIL+ +SG+T GTVGFG+D LG+  +KLD       + LLP   DG+ ADE+ 
Sbjct: 69  RDEWAQGFILNFESGYTDGTVGFGLDALGMLGIKLDSSPDRTDSGLLPTHDDGKAADEYS 128

Query: 118 RLGVAFKARISKTEVKVGEWMPVLPILRSDDGRSLPQTLRGGQITSKEIDGLTLYGGQFR 177
           +LG+  K +IS+TE+K+G  +P LP L+ +DGR LPQT  GG +TSKEI GLT  GG+  
Sbjct: 129 KLGLTGKVKISQTELKIGTLIPELPTLQPNDGRILPQTFEGGLLTSKEIKGLTFTGGRID 188

Query: 178 ANSPRDDSSMNDLSMFGKT-----AFTSDRFNFQGAEYAFNDKRTQIGLWN-AQLKDIYS 231
               R+D++  DL++  K       F++D     G +Y F D+ T  G ++ AQL DIY 
Sbjct: 189 KAKDRNDTNWEDLALNNKNGRFGGTFSADNLALGGLDYQFTDRIT--GSYHFAQLDDIYR 246

Query: 232 QQFINLIHSQPLGNWTLGANLGFFYGKDDGSARAGELDNKTWSGLFSAKYGGNTFYLGLQ 291
           Q FI ++ +QP G  TLGA+L      D G+A+AG +DN T +G+ S   GG+      Q
Sbjct: 247 QHFIGMVATQPWGPGTLGADLRLAMSDDAGAAKAGNIDNTTVNGMLSYALGGHKVSAAWQ 306

Query: 292 KLTGNSAWMRVNGTSGGTLANDSYNASYDNAQEKSWQVRHDYNFAALGVPGLTLMNRYIS 351
           +L+G SA+  V+G +   L N      +  A E+SWQ R+DYNFAALGVPGLT M RYIS
Sbjct: 307 QLSGESAFPYVDG-ADPYLVNFVQINDFAGADERSWQARYDYNFAALGVPGLTFMTRYIS 365

Query: 352 GSNVHTGTVTDGKEWGRESELGYTVQSGSLKNLTVRLRNSSMRRDYSNNEFDENRLIVSY 411
           G NV      +GKEW R +EL Y VQSG LKN+ VRLRN++ R +++  + DE RL+VSY
Sbjct: 366 GDNVSRAAGGEGKEWERNTELKYVVQSGPLKNVAVRLRNATFRSNFA-RDADEVRLLVSY 424

Query: 412 PISL 415
            ++L
Sbjct: 425 SVAL 428