Pairwise Alignments

Query, 416 a.a., porin from Pseudomonas simiae WCS417

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  254 bits (650), Expect = 3e-72
 Identities = 151/422 (35%), Positives = 235/422 (55%), Gaps = 25/422 (5%)

Query: 9   LLLATAVASLALPVVAEEH-GFLEDASANLNLRNFFFNRNYTNPTKAQGGAQEWTQSFIL 67
           L ++   + LA+    +E  GF+ED+  ++  R  +F+R++ N    Q   +E    F+ 
Sbjct: 11  LAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREETGLGFVG 70

Query: 68  DAKSGFTQGTVGFGVDVLGLYSLKLDGGRGTGGTQLLPLDHDGRPADEFGRLGVAFKARI 127
             +SGFTQGTVG GVD +G+  LKLD G+G  GT L P   DGR  D++ + G A K RI
Sbjct: 71  TFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLFPTGSDGRSQDDYSKGGGAVKFRI 130

Query: 128 SKTEVKVGEWMPVLPILRSDDGRSLPQTLRGGQITSKEIDGLTLYGGQFRANSPRDDSSM 187
           S T +KVG+    LP+  +DD R LP+  +G  ITS EI+GLTL+ G F + + ++ ++ 
Sbjct: 131 SDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFTSLTAQEQTN- 189

Query: 188 NDLSMFGKTAFTSDRFNFQGAEYAFNDKRTQIGLWNAQLKDIYSQQFINLIHSQPLG-NW 246
                  + +F     N  G  YAF D      L+ ++++D + + + N+  + P+  N 
Sbjct: 190 -------RDSFGLKEANVVGGTYAFTD-NLSTSLYYSKVEDYWRKYYANVNWALPISDNQ 241

Query: 247 TLGANLGFFYGKDDGSAR-----AGELDNKTWSGLFSAKYGGNTFYLGLQKLTGNSAW-M 300
            L  +   +  K +GSA        +LDN+ +S   +   G +TF L  QK+TG+  +  
Sbjct: 242 GLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGDYGY 301

Query: 301 RVNGTSGGT--LANDSYNASYDNAQEKSWQVRHDYNFAALGVPGLTLMNRYISGSNVHTG 358
            ++G  GGT  LAN    + ++   EKSWQ R+D NFA  G+PGLT M RY+ GS+ +  
Sbjct: 302 GIDG--GGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSDANVA 359

Query: 359 TVTDGKEWGRESELGYTVQSGSLKNLTVRLRNSSMRRD----YSNNEFDENRLIVSYPIS 414
             ++GKEW R+ ++ Y +Q G  K+L+ R+R ++ R      Y +   DE RLIV YP+S
Sbjct: 360 GTSNGKEWERDVDIKYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLS 419

Query: 415 LL 416
           +L
Sbjct: 420 IL 421