Pairwise Alignments

Query, 416 a.a., porin from Pseudomonas simiae WCS417

Subject, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  205 bits (521), Expect = 2e-57
 Identities = 149/457 (32%), Positives = 231/457 (50%), Gaps = 70/457 (15%)

Query: 10  LLATAVASLALPVVA----------EEHGFLEDASANLNLRNFFFNRNYTNPTKAQGGAQ 59
           +L T ++ +AL ++A          +  GF+ED+ AN+ LRN + NR+  + T  Q    
Sbjct: 1   MLKTRISLVALAMIAATQAQANDQADSKGFIEDSHANVLLRNAYINRDKKHGTDDQ---I 57

Query: 60  EWTQSFILDAKSGFTQGTVGFGVDVLGLYSLKLDGGRGTGGT---------QLLPLDHDG 110
           EW Q+FI +  SGFTQGTVG GVD  GLY+++LDGG+G  G          +    + + 
Sbjct: 58  EWGQAFIANFSSGFTQGTVGVGVDAFGLYAVRLDGGKGHNGGGGVDFFKPHETTNAEGNA 117

Query: 111 RPADEFGRLGVAFKARISKTEVKVGEWMPVLPILRSDDGRSLPQTLRGGQITSKEIDGLT 170
                  R G A K RIS T +K G+ MP LP+L+ DD R LP++  G  ITSKEI GL 
Sbjct: 118 SSPHNLARGGAAVKFRISNTVLKYGDQMPALPVLQYDDARLLPESFTGTLITSKEIQGLE 177

Query: 171 LYGGQF-----RANSPRDDSSMNDLSMFGKTAFTSDRFNFQGAEYAFNDKRTQIGLWNAQ 225
           L  G+F     ++   RD   +  +             N  G  Y F D  T   L+ A 
Sbjct: 178 LNAGRFTQEARKSAERRDGGGLKSI-------------NVLGGSYKFTDNFT-ASLYTAD 223

Query: 226 LKDIYSQQFINLIHSQPLG---NWTLGANLGFFYGKDDGSARAGELD---NKTWSGLFSA 279
            +D+  + ++ L +  P+    + TL  N G+    ++   +A  L+   N  WS   + 
Sbjct: 224 NEDVMKKHYLGLNYVFPIASDQSLTLDFN-GYKSDINNKYVKAAGLNGDSNTIWSLAATY 282

Query: 280 KYGGNTFYLGLQKLTGNSA-----WMRVNGTSGG----TLANDSYNASYDNAQEKSWQVR 330
            YG ++F L  Q+ TG++      +    G   G     LAN SY + ++   E+SWQ+ 
Sbjct: 283 AYGAHSFTLAHQRSTGSTGYNYGFYQNAGGVGDGGSTIYLAN-SYWSDFNAEDERSWQLG 341

Query: 331 HDYNFAALGVPGLTLMNRYISGSNVHTGTVT------DGKEWGRESELGYTVQSGSLKNL 384
           +  +F A G+PGLT    Y+ G N++T  V       +GKE    +++ Y VQ G  K+L
Sbjct: 342 YGLDFGAYGIPGLTYKLAYVVGDNINTRNVANPQGFGEGKEREIFNQIRYVVQDGPAKDL 401

Query: 385 TVRLRNSSMRRDYS------NNEFDENRLIVSYPISL 415
           +++LR+S +R + +      N++ +E R+ V YPIS+
Sbjct: 402 SIKLRSSFLRTNNAVQQNGYNDDGNEVRVFVEYPISI 438