Pairwise Alignments

Query, 416 a.a., porin from Pseudomonas simiae WCS417

Subject, 444 a.a., outer-membrane porin E from Pseudomonas putida KT2440

 Score =  222 bits (566), Expect = 2e-62
 Identities = 162/446 (36%), Positives = 224/446 (50%), Gaps = 47/446 (10%)

Query: 11  LATAVASLALPVVAEEHGFLEDASANLNLRNFFFNRNYTNPTKAQGGAQEWTQSFILDAK 70
           LA AVA   L   A   GF+ED+  +L+ R  +FN +       Q   +E  Q F LD  
Sbjct: 6   LALAVALGVLAQQAGAAGFVEDSKLSLSSRTMYFNDDNRESGIDQ---KESGQGFKLDYL 62

Query: 71  SGFTQGTVGFGVDVLGLYSLKLDGGRGT---GGTQLLPLDHDGRPADEFGRLGVAFKARI 127
           SGFTQGTVGFGVDV  L+ + LDGGRG+         P D DG    ++ R+G   KAR 
Sbjct: 63  SGFTQGTVGFGVDVQALWGIHLDGGRGSRPDANNTFFPSDSDGSAVHDWARIGGNAKARF 122

Query: 128 SKTEVKVGEWM-PVLPILRSDDGRSLPQTLRGGQITSKEIDGLTLYGGQFRANSPRDDSS 186
           SKTEV  G  + P+LPIL S+DGR LPQT  GG + SKEID LT+  GQ      R  S+
Sbjct: 123 SKTEVHYGSALAPMLPILVSNDGRLLPQTFEGGTLQSKEIDNLTINAGQLTHAMGRASSN 182

Query: 187 MNDLSMFGKTAF-TSDRFNFQGAEYAFNDKRTQIGLWNAQLKDIYSQQFINLIHSQPLG- 244
              LS+ G  AF  S++F F G +Y      T +  + + L+D Y Q F+   H   +  
Sbjct: 183 RTGLSVSG--AFRDSNKFQFAGGDYKLTPDLT-LQYYYSNLEDFYKQHFLGATHVFKIAD 239

Query: 245 NWTLGANLGFFYGKDDG---------------SARAGELDNKTWSGLFSAKYGGNTFYLG 289
           N +   +L +F    DG               +  +GE+DNKTWS +F+   GG+   LG
Sbjct: 240 NQSFKTDLRYFDSSSDGKNGQTGYAFDNNGGYAKNSGEVDNKTWSAMFTYTLGGHALMLG 299

Query: 290 LQKL----------------TGNSAWMRVNGTSGGTLANDSYNASYDNAQEKSWQVRHDY 333
            Q++                 G+++ +  NG +   L  DS    +  A E +   ++ Y
Sbjct: 300 HQQVGDDGGFVWLNQGSVRKDGSTSSLEGNGGASFYLFTDSMINQFARAGENTTFGQYSY 359

Query: 334 NFAALGVPGLTLMNRYISGSNVHTGTVTDG--KEWGRESELGYTVQSGSLKNLTVRLRNS 391
           +FAALGVPGL     Y+ G +V   +  DG   EW R++ + YT+Q G+LK L   LR  
Sbjct: 360 DFAALGVPGLKASVSYLRGDDVRNRS-GDGTYNEWERDARVDYTLQEGTLKGLGFSLRQG 418

Query: 392 SMR-RDYSNNEFDENRLIVSYPISLL 416
             R    S  + D+ R IV+Y  + L
Sbjct: 419 VYRGSGESALDKDQTRFIVNYTYNFL 444