Pairwise Alignments

Query, 416 a.a., porin from Pseudomonas simiae WCS417

Subject, 447 a.a., tyrosine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  243 bits (620), Expect = 8e-69
 Identities = 148/433 (34%), Positives = 228/433 (52%), Gaps = 36/433 (8%)

Query: 17  SLALPVVAEE--HGFLEDASANLNLRNFFFNRNYTNPT---------KAQGGAQEWTQSF 65
           S A+   AE+   GF+E +S  +  RNF+FNR+  + T            G ++ W  + 
Sbjct: 18  SYAISAQAEDKPEGFIEGSSLTVLNRNFYFNRDNRDSTAPTYNSGKGNTNGYSEAWAHAI 77

Query: 66  ILDAKSGFTQGTVGFGVDVLGLYSLKLDGGRGTGGTQ----LLPLDHDGRPADEFGRLGV 121
           I    SGFTQGTVGFGVD   +  LKLD G G  G +    +LP+D+ G   DE+ ++G 
Sbjct: 78  ISKFNSGFTQGTVGFGVDAFAMIGLKLDTGDGRNGGRSSFDVLPVDNKGEARDEYTKVGG 137

Query: 122 AFKARISKTEVKVGEWMPVLPILRSDDGRSLPQTLRGGQITSKEIDGLTLYGGQFRANSP 181
           A K R+  T VKVG+  P  P++ S D R LP++ RG  + +  I GLTL GG+  A S 
Sbjct: 138 AAKVRLFDTIVKVGDVFPSTPVVASGDSRLLPESFRGVTVENTSIQGLTLQGGRLHAMSQ 197

Query: 182 RDDSSMND--LSMFGKTAFTSDRFNFQGAEYAFNDKRTQIGLWNAQLKDIYSQQFINLIH 239
              S++ND  ++ +G     S    + G +Y+ ND  T + ++ +QLKD+++Q +     
Sbjct: 198 PVSSNLNDNFVTFYGGPV-NSPWIGYGGGDYSINDNWT-VSVYASQLKDVWNQYYAGTSV 255

Query: 240 SQPLGNWTLGANLGFFYGK--DDGSARAGELDNKTWSGLFSAKYGGNTFYLGLQKLTGNS 297
             PL +  L    GF Y K  D+G  R GE DN  WS     +YG +T  L  Q+  G+ 
Sbjct: 256 VYPLSD-DLALIGGFNYYKAVDEGKKRLGEFDNNIWSAKVGVRYGAHTLALSHQRNNGDD 314

Query: 298 AWMRVNGTSGGTLANDSYNASYDNAQEKSWQVRHDYNFAALGVPGLTLMNRYISGSNV-- 355
            +  +  +    + N    + +++ +E+SW +R+D NF + G+PGLT M RY  GS    
Sbjct: 315 DFDYLRQSDSIFVDNSIQYSDFNSPKERSWMLRYDLNFTSYGIPGLTFMTRYARGSGADY 374

Query: 356 ------------HTGTVTDGKEWGRESELGYTVQSGSLKNLTVRLRNSSMRRDYSNNEFD 403
                       +   + + K W R+ E+ Y VQ+G  K+L+ RLR ++ R     ++ D
Sbjct: 375 SNANQFYMRTDDNGNPLDNQKRWERDVEVKYVVQTGPAKDLSFRLRQATTRATAFESDLD 434

Query: 404 ENRLIVSYPISLL 416
           E R+I+ YP+S+L
Sbjct: 435 ETRVIIEYPLSIL 447