Pairwise Alignments

Query, 375 a.a., ABC transporter for branched-chain amino acids, substrate-binding component (from data) from Pseudomonas simiae WCS417

Subject, 380 a.a., Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1) from Variovorax sp. SCN45

 Score =  166 bits (420), Expect = 1e-45
 Identities = 115/368 (31%), Positives = 179/368 (48%), Gaps = 19/368 (5%)

Query: 13  AAMVLAGVAGHSFAAD-TIKIGIAGPKTGPVTQYGDMQFMGAKQAIADINAKG-GVDGKM 70
           AA+    V+G   A +  +KIG +GP +GP    G     G + AI ++NAK   V GK 
Sbjct: 14  AALAAITVSGQVQAQEQVVKIGHSGPLSGPNAFAGKDNENGVRLAIEELNAKKLMVGGKT 73

Query: 71  L--EAKEYDDACDPKQAVAVANKVVNDGVKFVVGHLCSSSTQPASDIYEDEGVIMITPAA 128
           L  E    DD CD K  V+VA K V+DGVKFV+G  CS    PAS IY D GV++ T   
Sbjct: 74  LKFELVSEDDQCDAKTGVSVAQKFVDDGVKFVMGPYCSGVAIPASRIYSDGGVLLST-VG 132

Query: 129 TSPEITARGYKLIFRTIGLDSAQGPAAGNYIADHVKPKIVAVLHDKQQYGEGIATAVKQT 188
           T+P++T  GYK ++R I  D+  G A   Y A  +K K V V+ D+  +G+G+A    + 
Sbjct: 133 TNPKVTQGGYKNLYRIIASDNQIGGAMAVYAAKVLKVKKVGVIDDRTAFGQGLAEEFTKE 192

Query: 189 LEKKGTKVAVFEGLNAGDKDFSSIIQKLKQANVDFVYYGGYHPELGLILRQAKEKGLNAK 248
            + +G  V   E       DF++I+  +K  + + +++GGY P+   + RQ K+  +  K
Sbjct: 193 AKTQGLTVVGQEFTTDKAVDFTAILTNMKAKSPEAIFFGGYAPQAAPMARQMKQLAVAGK 252

Query: 249 FMGPEGV--------GNDSISQIAQGASEGLLVTLPKSFDTDPANKAIVEEFAKNKQDPT 300
            +G + V        G D+++ +   A  G ++   +S        A  E+F K      
Sbjct: 253 LLGGDTVCSPATGKLGGDAVNDVVFCAQGGSILEKAQS------GPAFKEKFKKRFNIDA 306

Query: 301 GPFVFPAYSAIEVIAGGIKAAKSEDTAKVAEAIHAGTFKTPTGDLSFDAKGDLKDFKFVV 360
             +    Y  +  I   +K A S D  KV   ++  T+K      ++D KG++K     V
Sbjct: 307 DAYAASYYDQVMFIGESMKKANSVDPDKVGAELYKTTYKGVAATYAYDDKGNMKQAPITV 366

Query: 361 YEWHFGKP 368
           + +    P
Sbjct: 367 FTFKNAAP 374